Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq213694 102 5e-17 seq211834 100 2e-16 seq186083 96.9 2e-15 seq216288 93.3 3e-14 seq189625 87.8 1e-12 seq186237 87.8 1e-12 seq209235 86.0 4e-12 seq193542 86.0 4e-12 seq221315 82.4 5e-11 seq212968 82.4 5e-11 >seq213694 Length=3719 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 1614 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1673 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || || || || || | |||||| |||||||| Sbjct 1674 GGCCAGAGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGG 1733 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | || ||||| ||||| Sbjct 1734 GGGGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCAGAGCTCT 1792 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | ||| || || || ||||| | ||| || || || ||||||||| Sbjct 1793 CGACCTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 1845 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||||| || |||||| || ||||| || || | Sbjct 2175 GCCGCCACGCAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 2234 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || ||||| || || || | ||||| || || || || Sbjct 2235 GAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGGGG 2294 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||||| || ||| | || ||||| |||||||| Sbjct 2295 AATACCCTCCTTGTCCTGAATCTTTTG-CTTGACGTTCTCGATCGTGTCCGAGCTCTCCA 2353 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || ||||| | || ||||| || |||||||| Sbjct 2354 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2402 >seq211834 Length=2527 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 1334 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1393 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || ||||| |||| || || || || ||||| || || | ||||| ||||| || Sbjct 1394 GGCGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 1453 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| ||||| || || ||| | || ||||| ||||| Sbjct 1454 AGGGATGCCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTCTCGATCGTGTCCGAGCTCT 1512 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| ||||| || ||||| | ||| || || || |||||||| Sbjct 1513 CGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 1564 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||||| ||| ||||||||| ||||| || || | Sbjct 1721 GCCGCCGCGCAGACGAAGAACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGC 1780 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| || || || || Sbjct 1781 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGG 1840 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || || || | ||| | Sbjct 1841 AATACCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTATCGCTGGACTCGA 1899 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTGATTG 34714 | || | ||| || || || ||||| | || ||||| || |||||||| |||| ||| Sbjct 1900 CCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATAGTTGGTTG 1957 >seq186083 Length=725 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| ||| |||||| || ||||| || || Sbjct 486 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTC 545 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || |||||||| || | ||||| ||||| || Sbjct 546 GGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGG 605 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| ||||| || || ||| | || ||||| ||||| Sbjct 606 GGGGATGCCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTCTCGATCGTGTCCGAGCTCT 664 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||| || || || ||||| | || ||||| || |||||||| Sbjct 665 CGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 716 >seq216288 Length=1153 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | || | |||||||| |||||| || ||||| || || | Sbjct 300 CCGCCGCGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 241 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || | |||||| ||||| || || Sbjct 240 AGCGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGG 181 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || ||| | || ||||| |||||| || Sbjct 180 ATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATAGTGTCCGAGCTCTCGAC 122 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || || || || |||||||| Sbjct 121 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 74 >seq189625 Length=695 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | |||||||| |||||| || ||||| || || | Sbjct 443 GCCGCCGCGCAGACGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 502 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || || || || || | |||||| || || || || Sbjct 503 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 562 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || ||||| ||| || | Sbjct 563 GATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCCGAGCTTTCGA 621 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || ||||| | ||| || || || ||||||||| Sbjct 622 CCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 671 >seq186237 Length=484 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || |||||| | ||||| | || | ||||| || |||||| || ||||| || || Sbjct 28 GTTGCCGCCGCGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 87 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || ||||| || || | |||||| |||||||| Sbjct 88 GGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGG 147 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTC 34655 || | ||||||||||| |||||| || || | || || || | ||| Sbjct 148 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTCTCGATAGTATCGCTGGACTC 207 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || ||||| || ||||| | ||| || ||||| |||||||| Sbjct 208 GACCTCGAGAGTGATCGTCTTGCCGGTCAGCGTCTTGACAAAGATCTGCAT 258 >seq209235 Length=1252 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | || ||||| |||||| || ||||| || || | Sbjct 1104 CCGCCACGAAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1045 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || ||||| || || || | |||||| ||||| || || Sbjct 1044 AGGGTGCGACCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGGTCGGGGGGA 985 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || ||| | || ||||| | ||| || Sbjct 984 ATACCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCGCTGGACTCAAC 926 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 || | ||| || || || || || | || ||||| || ||||||| ||||| Sbjct 925 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTGTTG 873 >seq193542 Length=1181 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | |||||||| |||||| || ||||| || || | Sbjct 150 GCCGCCGCGCAGACGAAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGC 209 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || |||||||| || | ||||| ||||| || || Sbjct 210 CAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGG 269 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||||||| || ||| | || ||||| ||| | Sbjct 270 GATGCCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATGGTGTCGGACGACTCGA 328 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTGATTG 34714 | || | ||| || || || || || | || ||||| || || |||| ||||| ||| Sbjct 329 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTGTTGGTTG 386 >seq221315 Length=7247 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | ||| || | || | |||||||| |||||| || ||||| || || Sbjct 4624 GTTGCCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 4565 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 | || || || |||| || || || || ||||| || || | ||||| |||||||| Sbjct 4564 GGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGG 4505 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | ||||||||||| |||||| || || ||| | || ||||| | || Sbjct 4504 TGGAATGCCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTCTCGATCGTGTCGCTGGACT 4446 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | || ||||| || ||||| | || || || || |||||||| Sbjct 4445 CGACCTCGAGAGTAATCGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 4394 >seq212968 Length=3840 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || |||| || || || Sbjct 3693 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGC 3634 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| || || || || | ||||||||||| |||||| Sbjct 3633 TTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 3574 Query 34624 TGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 || || ||| | || ||||| ||| ||| || || | ||| || || || |||| Sbjct 3573 TG-CTTGACGTTCTCGATCGTGTCGCTCG-ACTCAACCTCGAGGGTGATGGTCTTGCCGG 3516 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTT 34709 | | || ||||| || || |||||||| Sbjct 3515 TCAGGGTCTTCACGAAGATTTGCATGTT 3488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313879026339284