Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq184308 107 1e-18 seq186083 104 2e-17 seq186237 95.1 8e-15 seq193542 87.8 1e-12 >seq184308 Length=541 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || | Sbjct 408 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCC 349 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| ||||| | || || ||||| Sbjct 348 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 289 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || |||| ||||| | | || |||||| Sbjct 288 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTCGCTGACTACAAC 229 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 228 ATCCAGAAGGAGTCGAC 212 >seq186083 Length=725 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || | || Sbjct 716 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 657 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||| ||||| || || | || || || || Sbjct 656 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 597 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || |||| ||||| | | ||| |||||| Sbjct 596 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 537 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 536 ATCCAGAAGGAGTCCAC 520 >seq186237 Length=484 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || |||||||||||||| || || |||| Sbjct 258 ATGCAGATCTTTGTCAAGACGCTGACCGGCAAGACGATCACTCTCGAGGTCGAGTCCAGC 199 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | || || || || ||||| || || | || || || || Sbjct 198 GATACTATCGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 139 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| || || | | ||| |||||| Sbjct 138 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 79 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 78 ATCCAGAAGGAGTCGAC 62 >seq193542 Length=1181 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || ||||| || || || || ||||| ||||| || || || | Sbjct 378 AATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTC 319 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || ||||| || ||||| || || | || || || || Sbjct 318 CGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 259 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || |||| || || | | || ||||| Sbjct 258 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCTGACTACAA 199 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 198 CATCCAGAAGGAGTCGAC 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337096110887984