Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq193245 82.4 6e-11 seq193244 82.4 6e-11 seq190105 82.4 6e-11 seq182554 82.4 6e-11 >seq193245 Length=911 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 176 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 234 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 235 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 292 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 293 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 324 >seq193244 Length=588 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 176 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 234 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 235 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 292 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 293 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 324 >seq190105 Length=1086 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 854 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 912 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 913 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 970 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 971 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 1002 >seq182554 Length=593 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 48539 ACCCAGAGATGGGTGACAAGTTTGCGTCCTT-CACGGCGCAAAAGGG-GACATGTGG-AG 48595 |||| | ||| || |||||||| ||||| ||||| ||| ||||| | ||||| || Sbjct 418 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGTGTCATGTCCCAG 360 Query 48596 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 48655 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 359 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 302 Query 48656 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 48687 ||||||| |||||||| ||||| | |||||| Sbjct 301 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368508586930988