Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20castellanii_20[genbank_20GCA_5F000826485.1_202015-01- 07] 221,748 sequences; 115,049,889 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq205955 104 3e-17 seq205954 104 3e-17 seq205953 104 3e-17 seq205952 104 3e-17 >seq205955 Length=2194 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 575 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 576 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 635 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 636 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 696 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 755 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 756 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 815 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 816 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 875 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 876 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 935 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 936 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 995 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 996 CTTGTACATCTCCCAGAT 1013 >seq205954 Length=2163 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 457 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 516 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 517 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 575 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 576 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 635 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 636 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 695 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 696 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 755 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 756 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 815 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 816 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 875 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 876 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 935 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 936 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 995 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 996 CTTGTACATCTCCCAGAT 1013 >seq205953 Length=2829 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 915 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 856 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 855 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 797 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 796 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 737 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 736 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 677 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 676 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 617 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 616 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 557 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 556 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 497 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 496 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 437 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 436 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 377 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 376 CTTGTACATCTCCCAGAT 359 >seq205952 Length=2760 Score = 104 bits (114), Expect = 3e-17 Identities = 359/558 (64%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || || ||||| | || || | |||||| || | ||| Sbjct 915 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 856 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| || || || || |||||||| || || | || ||| | || || ||||| Sbjct 855 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 797 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT------GGCTTCGTT 48313 ||||| || ||||| || ||| || || | ||| || | | | | || || Sbjct 796 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACGCCCTCCTT 737 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| ||||| || ||||||||||| ||| | |||| || || || || Sbjct 736 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACAGAGGGCACGGTCTCGATGGC 677 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 ||||| || || || || || ||||| || || || | || || Sbjct 676 GCGGAAGAGGCGGTCCTTCTCGACCGAGTCCTTGACGTAGGTGTCGATAAGGAGCGAGTA 617 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 ||| |||||||| || || || || || || ||||| ||||| || || | ||| || | Sbjct 616 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 557 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| |||||| | || || | || | |||||| || || || || ||||| Sbjct 556 CACCTGCACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 497 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 || || || || || || || || || || | | |||| | | || | ||| Sbjct 496 CGCGAAGAAGGCCAAGACGTGCTTGATGAAGTGCCTCTCGTCGTTGTTGAGCGATTCCCA 437 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || || || || | ||| ||||| || || ||||| || || ||||| || || Sbjct 436 GTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCTT 377 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 376 CTTGTACATCTCCCAGAT 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692743282286720