Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq14648 93.3 9e-14 seq11422 93.3 9e-14 seq5079 93.3 9e-14 seq31773 87.8 4e-12 seq17046 87.8 4e-12 seq4713 87.8 4e-12 seq2410 87.8 4e-12 seq33052 86.0 1e-11 seq24756 86.0 1e-11 seq14951 86.0 1e-11 seq5313 86.0 1e-11 seq396 86.0 1e-11 seq18987 84.2 5e-11 seq15399 84.2 5e-11 seq14034 84.2 5e-11 seq6430 84.2 5e-11 seq5305 84.2 5e-11 >seq14648 Length=3193 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || ||||||| || |||||||||||||||||||||||| Sbjct 1515 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 1574 Query 165776 ATGGGC 165781 | ||| Sbjct 1575 GTCGGC 1580 >seq11422 Length=2819 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || ||||||| || |||||||||||||||||||||||| Sbjct 943 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 884 Query 165776 ATGGGC 165781 | ||| Sbjct 883 GTCGGC 878 >seq5079 Length=9433 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || ||||||| || |||||||||||||||||||||||| Sbjct 3338 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 3279 Query 165776 ATGGGC 165781 | ||| Sbjct 3278 GTCGGC 3273 >seq31773 Length=543 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 413 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 472 Query 165776 ATGGGC 165781 | ||| Sbjct 473 GTCGGC 478 >seq17046 Length=2567 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCA 165773 ||||||||||||||||||||| || ||||||| || |||||||||||||||||||||| Sbjct 2498 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAGCCCCA 2555 >seq4713 Length=4144 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 395 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 336 Query 165776 ATGGGC 165781 | ||| Sbjct 335 GTCGGC 330 >seq2410 Length=5215 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||||||||||||||||||||||| Sbjct 2451 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACG 2510 Query 165776 ATGGGC 165781 | ||| Sbjct 2511 GTCGGC 2516 >seq33052 Length=547 Score = 86.0 bits (94), Expect = 1e-11 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGT-GGGTTCGAGCCCCAC 165774 ||||||||||||||||||||| || ||||||| || |||||||| ||||||||||||||| Sbjct 95 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTCGGGTTCGAGCCCCAC 36 Query 165775 GATGGGC 165781 | | ||| Sbjct 35 GGTCGGC 29 >seq24756 Length=646 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||| || ||||||| || ||||||||||||||||||||| Sbjct 590 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAGCCCC 646 >seq14951 Length=1404 Score = 86.0 bits (94), Expect = 1e-11 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC-AC 165774 ||||||||||||||||||||| || ||||||| || ||||||||||||||||||||| || Sbjct 887 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAGCCCCMAC 946 Query 165775 GATGGGC 165781 | | ||| Sbjct 947 GGTCGGC 953 >seq5313 Length=9648 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || | || || |||||||||||||||||||||||| Sbjct 8163 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTWAACCTTGTGGTCGTGGGTTCGAGCCCCACG 8104 Query 165776 ATGGGC 165781 | ||| Sbjct 8103 GTCGGC 8098 >seq396 Length=15506 Score = 86.0 bits (94), Expect = 1e-11 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATC-TGGTGGTCGTGGGTTCGAGCCCCAC 165774 ||||||||||||||||||||| || ||||||| | | ||||||||||||||||||||||| Sbjct 6474 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAAACCTTGTGGTCGTGGGTTCGAGCCCCAC 6415 Query 165775 GATGGGC 165781 | | ||| Sbjct 6414 GGTCGGC 6408 >seq18987 Length=1665 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCT-GGTGGTCGTGGGTTCGAGCCCCAC 165774 ||||||||||||||||||||| || || |||| || ||||||||||||||||||||||| Sbjct 65 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTKGTGGTCGTGGGTTCGAGCCCCAC 6 Query 165775 GATGG 165779 | ||| Sbjct 5 GGTGG 1 >seq15399 Length=1853 Score = 84.2 bits (92), Expect = 5e-11 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || ||||||| || ||||||||||||||||| |||||| Sbjct 854 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAG-CCCACG 912 Query 165776 ATGGGC 165781 | ||| Sbjct 913 GTCGGC 918 >seq14034 Length=1476 Score = 84.2 bits (92), Expect = 5e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGT-GGTCGTGGGTTCGAGCCCCAC 165774 ||||||||||||||||||||| || ||||||| || || | ||||||||||||||||||| Sbjct 183 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTSGKTCGTGGGTTCGAGCCCCAC 124 Query 165775 GATGGGC 165781 | | ||| Sbjct 123 GGTCGGC 117 >seq6430 Length=4462 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 ||||||||||||||||||||| || ||||||| || |||||||||||||||||||| Sbjct 3418 CTAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGAGCCC 3473 >seq5305 Length=6944 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 ||||||||||||||||||||| || || |||| || |||| ||||||||||||||||||| Sbjct 4452 CTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGCCGTGGGTTCGAGCCCCACG 4393 Query 165776 ATGGGC 165781 | ||| Sbjct 4392 GTCGGC 4387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057043407208220