Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq24165 105 7e-18 >seq24165 Length=2677 Score = 105 bits (116), Expect = 7e-18 Identities = 464/728 (64%), Gaps = 11/728 (2%) Strand=Plus/Minus Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 || ||||| ||||| || || ||||||||||| | ||| ||||||||| || || | Sbjct 2483 CTGTCCGCCACAAACTCAATGTATTGGCACATGAGCTCGGCGTTCATTCCAATGAGGCCA 2424 Query 16856 ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC-- 16913 || ||||||| || | | ||| | ||| || | || || ||||| || || Sbjct 2423 ACTGGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGG 2364 Query 16914 -TAGCAACTCGTTCCTCGGACGGT-GTATGTTTAAGATGTTTAAACATCAGACATGCGAA 16971 | | || ||| | ||||||| | || | ||| | | | || || || || Sbjct 2363 GTGGGAATA--TTCGT-GGACGGTCGGTTGACGAGCATGCTGTAG-AGGAGGCAGGCAAA 2308 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 |||||||| | ||||| ||||||||||| | || || || | || ||||| Sbjct 2307 GTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCTGGCAT 2248 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 || | ||||| | |||||| || | ||| ||| || ||||| |||||||| Sbjct 2247 GAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATACCCTC 2188 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGT---CGCGTCTTTGTTACGAATCCA 17148 || | || || || | ||||| || | | | || ||| | || |||||| Sbjct 2187 CACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTCAATCCA 2128 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA 17208 ||| | |||| || ||||| | ||| | || || |||||| ||||| || || | Sbjct 2127 TTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATTGAAGAG 2068 Query 17209 TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGA 17268 || || || | |||| | | || || || || | || |||||||| || Sbjct 2067 GCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACATTTCCGA 2008 Query 17269 GTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAAC 17328 ||| |||||||| ||||| |||||||| ||||| ||||| || || || | || ||||| Sbjct 2007 GTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGATCTGAAC 1948 Query 17329 TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 || ||| || | || | || || |||| ||||| || || || || || Sbjct 1947 CTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCAGCAAAGAA 1888 Query 17389 CGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAA 17448 ||||||| | || || || | ||| || || | || ||| | ||| | || Sbjct 1887 GGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAATGGTTGTG 1828 Query 17449 ATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACAT 17508 ||| | | || || || |||| |||||||| ||| | |||||||| ||||| Sbjct 1827 ATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTTTTGTACAT 1768 Query 17509 ATTCCAAA 17516 | ||||| Sbjct 1767 CTCCCAAA 1760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517173005983920