Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5862 219 5e-52 seq24165 205 1e-47 seq24166 176 5e-39 seq663 159 4e-34 seq310 145 9e-30 seq35896 138 1e-27 >seq5862 Length=2677 Score = 219 bits (242), Expect = 5e-52 Identities = 411/600 (69%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||||| || || ||||| ||||| || || ||||| ||| || ||| Sbjct 1881 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 1822 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||||||||| | ||| ||||||||||| ||||| || | | | || || ||||| Sbjct 1821 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGAA 1763 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATG 24310 || || || || || || || || | | ||| || | | | | |||| | | Sbjct 1762 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 1703 Query 24311 T---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | ||||| | | ||||| || || ||||| || || |||||| || || || || Sbjct 1702 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 1643 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 ||| ||||| | || || | || || || || || || ||||| || ||| Sbjct 1642 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 1583 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||||||||| |||||||| |||||||| || ||||| |||||||| || | |||||| | Sbjct 1582 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1523 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 |||||| || || | || || | || || || ||| |||| || || ||| || Sbjct 1522 AATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGC 1463 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| || ||||||||| |||||||| | ||| || |||| || || ||||| Sbjct 1462 AGCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCA 1403 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 || |||| ||| || | || || || || |||||||||| || ||||| ||||| Sbjct 1402 ATGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTT 1343 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 ||| ||||| | ||| | | || | | || ||||| | ||||| | |||||||| Sbjct 1342 TTTGTACATCTCCCAAACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGATT 1283 >seq24165 Length=2677 Score = 205 bits (226), Expect = 1e-47 Identities = 410/602 (68%), Gaps = 12/602 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||||| || || ||||| ||||| || || || || ||| || ||| Sbjct 2315 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 2256 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAA 24253 || ||||| ||||| | ||| || |||||||| ||||| || | | ||| || ||||| Sbjct 2255 CCTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTCCCCGAGAAGAA 2197 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATG 24310 || || || || || || || || | | ||| || | | | |||| | | Sbjct 2196 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTT 2137 Query 24311 T---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | ||||| || | ||||| || || ||||| || ||| |||||| || || || || Sbjct 2136 TTCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGC 2077 Query 24368 ATTAAAGAGATAGtttttttCATTACTA--TCTTTAACATATGTATCAATCAAAAGACTA 24425 ||| ||||| | || || | || || || || || || || ||||| || | Sbjct 2076 ATTGAAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAA 2019 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 ||||||||||| |||||||| |||||||| || ||||| |||||||| || | |||||| Sbjct 2018 TACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCA 1959 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 | ||||| || || | || || | || || || ||| |||| || || ||| Sbjct 1958 GGGATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGAT 1899 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 24605 || ||||| || ||||||||| ||||||||| | ||| || |||| || || ||| Sbjct 1898 GCAGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTC 1839 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 |||| ||| ||| || | || || || || |||||||||| || ||||| ||| Sbjct 1838 CAATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCC 1779 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 ||||| ||||| | ||| | | || | | || ||||| | ||||| | |||||| Sbjct 1778 TTTTTGTACATCTCCCAAACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGA 1719 Query 24726 TT 24727 || Sbjct 1718 TT 1717 >seq24166 Length=499 Score = 176 bits (194), Expect = 5e-39 Identities = 339/494 (69%), Gaps = 12/494 (2%) Strand=Plus/Minus Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAAAAT 24256 ||||| ||||| | ||| || |||||||| ||||| || | | ||| || ||||| || Sbjct 497 GGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTCCCCGAGAAGAAGAT 439 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGT-- 24311 || || || || || || || | | ||| || | | | |||| | | | Sbjct 438 ACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTC 379 Query 24312 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| || | ||||| || || ||||| || ||| |||||| || || || ||||| Sbjct 378 AATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATT 319 Query 24371 AAAGAGATAGtttttttCATTACTA--TCTTTAACATATGTATCAATCAAAAGACTATAC 24428 ||||| | || || | || || || || || || || ||||| || |||| Sbjct 318 GAAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 261 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488 |||||||| |||||||| |||||||| || ||||| |||||||| || | |||||| | Sbjct 260 ATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGG 201 Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 ||||| || || | || || | || || || ||| |||| || || ||| || Sbjct 200 ATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCA 141 Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 24608 ||||| || ||||||||| ||||||||| | ||| || |||| || || |||||| Sbjct 140 GCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAA 81 Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668 | ||| ||| || | || || || || |||||||||| || ||||| |||||| Sbjct 80 TGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTT 21 Query 24669 TTATACATATTCCA 24682 || ||||| | ||| Sbjct 20 TTGTACATCTCCCA 7 >seq663 Length=3190 Score = 159 bits (176), Expect = 4e-34 Identities = 429/644 (67%), Gaps = 18/644 (3%) Strand=Plus/Minus Query 53990 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 54049 |||| || || | || ||||| ||||| | ||| ||||| | |||||| ||||| Sbjct 2005 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATAGATCG 1946 Query 54050 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 54108 || | ||| ||||| ||| || |||||||||| || || || || || || ||||| Sbjct 1945 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1887 Query 54109 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC 54168 ||| || || |||||| | | || || | ||||| || |||| || || | | | Sbjct 1886 TTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1827 Query 54169 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 54228 ||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1826 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1767 Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGT--CCCGGAGATA-TAGCTTCCACTGGC 54285 ||||||||| | ||| ||||||| || || || ||| || || || | || || Sbjct 1766 CATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GC 1710 Query 54286 ACGAATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCAT 54343 |||||| | | | | || |||||||| || || || | || || || || || || Sbjct 1709 ACGAATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACAC 1652 Query 54344 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 54403 |||| | || ||||| || || ||||| || || || |||||||| ||||| || Sbjct 1651 TGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCAC 1592 Query 54404 CTAGACA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 ||| | | |||| | | || || ||||| || | || |||| || || || | Sbjct 1591 GAAGAAAGCTGTGGTCTTGGC--GTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGA 1534 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCT-ATATCCCATTGATGA 54520 || || || || | ||||| || ||||| | | | ||| || || || ||| Sbjct 1533 ACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACAG-CTCTGATGTCAGTTTTATGC 1475 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 | ||| || || || ||||| |||||||| || |||||||| || ||||| ||| | | Sbjct 1474 AGTCCCACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCACAATCTTTCCGTTCAAT 1415 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 54624 || | | || || ||||| || || || |||||||| || Sbjct 1414 TTGAAGAGATAAGAGCGCTCCAATGTCTTGAATCCAAAATAATT 1371 >seq310 Length=11085 Score = 145 bits (160), Expect = 9e-30 Identities = 436/663 (66%), Gaps = 14/663 (2%) Strand=Plus/Plus Query 53990 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 54049 |||| || || | || ||||| ||||| | ||| ||||| | ||| || ||||| Sbjct 1367 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACAGATCG 1426 Query 54050 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 54108 || | ||| ||||| ||| || |||||||||| || || || || || || ||||| Sbjct 1427 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1485 Query 54109 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC 54168 ||| || || | ||| | | || || | ||||| || |||| || || | | | Sbjct 1486 TTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1545 Query 54169 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 54228 ||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1546 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1605 Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGT--CCCGGAGATA-TAGCTTCCACTGGC 54285 ||||||||| | ||| ||||| | || || || ||| || || || | || || Sbjct 1606 CATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GC 1662 Query 54286 ACGAATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCAT 54343 |||||| | | | | || |||||||| || || || | || || || || || || Sbjct 1663 ACGAATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACAC 1720 Query 54344 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 54403 |||| | || ||||| || || ||||| || || || |||||||| ||||| || Sbjct 1721 TGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCAC 1780 Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||| | || | | || || ||||| || | || |||| || || || ||| Sbjct 1781 GAAGAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAAC 1840 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCT-ATATCCCATTGATGAAT 54522 || || || | ||||| || ||||| | | | ||| || || || ||| | Sbjct 1841 AGTTGTTGGGAGATCAGATTATATGTCTCCAACACCG-CTCTGATGTCAGTTTTATGCAG 1899 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 |||||| || || ||||| |||||||| || || ||||| || |||||| ||| | ||| Sbjct 1900 TCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTTTCCACAATCTTGCCGTTCAATTT 1959 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 | | || || ||||| || || || |||||||| || | ||||||| ||| Sbjct 1960 GAAGAGATAAGAGCGCTCCAATGTCTTGAAGCCAAAATAATTAAAGAGGAAGTCTCTTTC 2019 Query 54643 GTA 54645 || Sbjct 2020 ATA 2022 >seq35896 Length=749 Score = 138 bits (152), Expect = 1e-27 Identities = 247/357 (69%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||||| || || ||||| ||||| || || ||||| ||| || ||| Sbjct 359 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 300 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||||||||| | ||| ||||||||||| ||||| || | | | || || ||||| Sbjct 299 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGAA 241 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATG 24310 || || || || || || || || | | ||| || | | | | |||| | | Sbjct 240 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 181 Query 24311 T---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | ||||| | | ||||| || || ||||| || || |||||| || || || || Sbjct 180 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 121 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 ||| ||||| | || || | || || || || || || ||||| || ||| Sbjct 120 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 61 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 ||||||||| |||||||| |||||||| || ||||| |||||||| || | |||||| Sbjct 60 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593294164977120