Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq49354 120 3e-22 seq20128 100 2e-16 seq9092 95.1 1e-14 seq37486 91.5 1e-13 seq21227 87.8 2e-12 seq50001 86.0 5e-12 seq29893 86.0 5e-12 seq23100 86.0 5e-12 seq6315 86.0 5e-12 seq3581 84.2 2e-11 seq110 84.2 2e-11 >seq49354 Length=412 Score = 120 bits (132), Expect = 3e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 28963 TGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAG 29022 |||| || ||| | || || | || ||||| || |||||| |||| |||| || ||| Sbjct 412 TGCAGATTTTCGTGAAGACGCTCACTGGCAAGACGATTACCCTCGAAGTGGAATCCTCAG 353 Query 29023 AGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAAC 29082 | || | | || | |||||||| ||| || || || || | || ||||||| Sbjct 352 ACTCGATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCTGATCAAC 293 Query 29083 AAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATA 29142 || | || |||||||| |||||||| || ||||| | || ||||||| ||||| | Sbjct 292 AACGTCTGATCTTTGCAGGCAAACAGCTTGAAGACGGCCGTACCTTGGCCGACTACAACA 233 Query 29143 TTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||| ||||||||||| ||||| | || || ||||||| Sbjct 232 TTCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTTTGAGAGGAGG 187 >seq20128 Length=1734 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| ||||| || || || ||||| || |||| || | Sbjct 860 AATGCAAATCTTCGTGAAAACTTTGACTGGAAAGACGATTACTCTGGAGGTGGAATCCTC 919 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| | | | | | |||||||| ||| || || || || | ||| ||||| Sbjct 920 AGACTCTATTGAAAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCA 979 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | || ||||| || || || || ||||| || | || | ||||||||||| Sbjct 980 GCAACGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTCGCCGATTACAA 1039 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||||||||| ||| ||||| | || || ||||||| Sbjct 1040 CATCCAGAAGGAATCTACTCTCCACTTGGTGCTCCGCCTAAGAGGAGG 1087 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| ||||| ||||| || |||||| ||| ||| | | Sbjct 1317 ATGCAGATCTTTGTCAAAACTTTGACTGGCAAGACGATTACCCTTGAAGTGGAGAGCTCT 1376 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || | ||||| || ||| ||||| || || | ||| || || Sbjct 1377 GATAGCATCGAGAATGTGAAGCAGAAGATTCAAGATAAGGAGGGCATCCCCCCTGACCAG 1436 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || |||||||| |||||||| || || ||| | || | ||||| ||||| Sbjct 1437 CAGCGTCTCATCTTTGCAGGCAAACAGCTTGAGGATGGCCGCACCCTCGCCGACTACAAC 1496 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||||||||| |||||| | ||| | || | ||||||| Sbjct 1497 ATTCAAAAGGAATCTACCCTTCACCTCGTGCTGCGCCTGAGAGGAGG 1543 >seq9092 Length=1269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || | || ||||| || |||||| |||| |||| || || Sbjct 45 ATGCAGATTTTCGTGAAGACGCTCACTGGCAAGACGATTACCCTCGAAGTGGAATCCTCA 104 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | |||||||| ||| || || || || | || || || Sbjct 105 GACTCGATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 164 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | | |||||||| |||||||| || || ||| | || ||||||| ||||| Sbjct 165 CAGCGCTTGATCTTTGCAGGCAAACAGCTCGAGGATGGCCGCACGTTGGCCGACTACAAC 224 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||||||||| || ||||| | |||| || || || Sbjct 225 ATCCAGAAGGAATCTACTCTCCATCTGGTGCTTAGATTGCGTGGTGG 271 >seq37486 Length=869 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| |||| |||||||| || || ||||| ||| ||| |||| || | Sbjct 556 AATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACCCTCGAGGTGGAATCCTC 497 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || | | | || | ||||| || || || || || || ||||| ||||| Sbjct 496 GGACTCTATCGAGAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATGCCCCCTGATCA 437 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | || |||||||| ||||| || ||||| ||| || | || || ||||| Sbjct 436 GCAGCGCCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACCCTTGCAGACTACAA 377 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || || ||| ||||| | || || ||||||| Sbjct 376 CATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTTTGAGAGGAGG 329 >seq21227 Length=1716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | || || ||||| || || ||||||||| ||| |||| || | Sbjct 1091 AATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTC 1150 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | |||||||| || || || || || | ||| |||||| Sbjct 1151 TGACTCGATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCA 1210 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | ||||| || || || || || || || ||| | || |||| || ||||| Sbjct 1211 ACAGCGCCTTATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAA 1270 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || || |||||||||||||| || ||||| Sbjct 1271 CATCCAAAAGGAATCTACTCTCCATTTGGTG 1301 >seq50001 Length=390 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || |||||||| ||||| ||||| ||| |||| ||| | | Sbjct 89 ATGCAGATCTTTGTGAAGACATTGACCGGCAAGACCATCACCCTCGAAGTGGAGTCATCT 148 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||||| || ||| || || || || | || ||||| Sbjct 149 GATTCGATTGAGAATGTAAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 208 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | | |||||||| ||||| || || || ||| ||| |||| || ||||| Sbjct 209 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACTCTGGCTGACTACAAC 268 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||||||||| |||||| ||||| Sbjct 269 ATTCAGAAGGAATCTACCCTTCACTTGGTG 298 >seq29893 Length=915 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| ||||| ||||||||| || |||| || | Sbjct 652 ATGCAGATCTTTGTAAAGACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAATCCTCT 711 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || | ||||| || ||| || || || || | ||| || || Sbjct 712 GACAGCATCGAGAATGTGAAGCAGAAGATTCAAGACAAGGAGGGCATTCCCCCTGACCAG 771 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || |||||||| |||||||| || || ||| | || |||| || ||||| Sbjct 772 CAGCGCCTCATCTTTGCAGGCAAACAGCTCGAGGATGGCCGCACACTGGCTGACTACAAC 831 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| || ||| ||||| | || || | ||||| Sbjct 832 ATCCAGAAGGAATCTACCCTCCACTTGGTGCTTCGTTTGAGGGGAGG 878 >seq23100 Length=704 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 |||||||| ||| ||||| || || | ||| |||||||| | || ||||| || Sbjct 415 AAGCAAAAGATTCAAGATAAGGAGGGCATTCCCCCTGATCAACAGCGCCTCATCTTCGCT 474 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 ||||| || || || ||| | || |||| || ||||| || ||||||||||||||| Sbjct 475 GGCAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAATCTACT 534 Query 29160 CTTCACATGGTG 29171 |||||| ||||| Sbjct 535 CTTCACTTGGTG 546 >seq6315 Length=1928 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| | || || ||||| || || ||||||||| |||| |||| || Sbjct 1599 AACATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATTACCCTCGAAGTGGAATCC 1658 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | | |||||||| || || || || || | ||| ||| Sbjct 1659 TCTGACTCGATTGAAAACGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCCCCTGAT 1718 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||| | || ||||| || ||||| || || || ||| | || | || || ||| Sbjct 1719 CAACAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTAGCTGACTAC 1778 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||||||||| || || ||| |||| | || | ||||||| Sbjct 1779 AACATCCAGAAGGAATCCACCCTCCACTTGGTCCTTCGCCTGAGAGGAGG 1828 >seq3581 Length=10373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||| ||||| ||||| ||| || || || | Sbjct 5042 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCT 5101 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || | ||||| || ||| ||||| || || | || ||||| Sbjct 5102 GATTCCATTGAAAATGTGAAGCAGAAGATTCAGGATAAGGAGGGCATCCCACCTGATCAG 5161 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || |||||||| ||||| || || || ||| | || |||| || ||||| Sbjct 5162 CAACGTCTGATCTTTGCAGGCAAGCAGCTCGAGGATGGCCGTACCTTGGCTGACTACAAC 5221 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||||||||| |||||| |||| Sbjct 5222 ATTCAGAAGGAATCTACCCTTCACTTGGT 5250 >seq110 Length=9649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| | || || ||||| ||||| || |||||| || ||| || Sbjct 301 AACATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACAATTACCCTGGAGGTGGAGTCC 242 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || | | | || | ||||| || ||| || || || || | ||| ||| Sbjct 241 TCTGATAGCATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGCATTCCCCCTGAT 182 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || | || ||||| || || || || || || ||| | || | ||||||||| Sbjct 181 CAGCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACCCTCGCCGATTAC 122 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 ||||| |||||||||||||| || ||| ||||| | || || Sbjct 121 AATATCCAGAAGGAATCTACACTCCACTTGGTGCTTCGTTT 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428035339450070