Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq49354 114 1e-20 seq48723 98.7 8e-16 seq20128 96.9 3e-15 seq21227 93.3 3e-14 seq4039 91.5 1e-13 seq9092 89.7 4e-13 >seq49354 Length=412 Score = 114 bits (126), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 25036 TGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAG 25095 |||| || ||| | || || | || ||||| || |||||| |||| |||| || ||| Sbjct 412 TGCAGATTTTCGTGAAGACGCTCACTGGCAAGACGATTACCCTCGAAGTGGAATCCTCAG 353 Query 25096 AGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAAC 25155 | || | | || |||||||||| ||| || || || || | || ||||||| Sbjct 352 ACTCGATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCTGATCAAC 293 Query 25156 AAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATA 25215 || | || |||||||| |||||||| | ||||| | || ||||||| ||||| | Sbjct 292 AACGTCTGATCTTTGCAGGCAAACAGCTTGAAGACGGCCGTACCTTGGCCGACTACAACA 233 Query 25216 TTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| ||||| ||||||||||| ||||| | || || ||||||| Sbjct 232 TTCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTTTGAGAGGAGG 187 >seq48723 Length=522 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| ||||| || || ||||||||| ||| |||| || | Sbjct 510 ATGCAGATCTTTGTAAAAACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTCT 451 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | | ||||||| || ||| ||||| || || | ||| |||||| Sbjct 450 GACTCTATTGAAAACGTCAAGCAGAAGATTCAAGATAAGGAGGGCATTCCCCCTGATCAA 391 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | |||||||| || ||||| || | |||||| | ||| | || || ||||| Sbjct 390 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTTGCAGACTACAAC 331 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| |||||||| ||||| | || | || ||||| Sbjct 330 ATCCAAAAGGAATCCACTCTTCATTTGGTGCTCAGACTGCGTGGAGG 284 >seq20128 Length=1734 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| ||||| || || || ||||| || |||| || | Sbjct 860 AATGCAAATCTTCGTGAAAACTTTGACTGGAAAGACGATTACTCTGGAGGTGGAATCCTC 919 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| | | | | |||||||||| ||| || || || || | ||| ||||| Sbjct 920 AGACTCTATTGAAAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCA 979 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || ||||| || || || || |||| || | || | ||||||||||| Sbjct 980 GCAACGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTCGCCGATTACAA 1039 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || |||||||||||||| ||| ||||| | || || ||||||| Sbjct 1040 CATCCAGAAGGAATCTACTCTCCACTTGGTGCTCCGCCTAAGAGGAGG 1087 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || ||||||| ||||| ||||| || |||||| ||| ||| | | Sbjct 1317 ATGCAGATCTTTGTCAAAACTTTGACTGGCAAGACGATTACCCTTGAAGTGGAGAGCTCT 1376 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || | ||||| || ||| ||||| || || | ||| || || Sbjct 1377 GATAGCATCGAGAATGTGAAGCAGAAGATTCAAGATAAGGAGGGCATCCCCCCTGACCAG 1436 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | || |||||||| |||||||| | || ||| | || | ||||| ||||| Sbjct 1437 CAGCGTCTCATCTTTGCAGGCAAACAGCTTGAGGATGGCCGCACCCTCGCCGACTACAAC 1496 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||||| |||||| | ||| | || | ||||||| Sbjct 1497 ATTCAAAAGGAATCTACCCTTCACCTCGTGCTGCGCCTGAGAGGAGG 1543 >seq21227 Length=1716 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || ||||| || || ||||||||| ||| |||| || | Sbjct 1091 AATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTC 1150 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | |||||||||| || || || || || | ||| |||||| Sbjct 1151 TGACTCGATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCA 1210 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | ||||| || || || || || | || ||| | || |||| || ||||| Sbjct 1211 ACAGCGCCTTATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAA 1270 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 || ||||||||||||||||| || ||||| Sbjct 1271 CATCCAAAAGGAATCTACTCTCCATTTGGTG 1301 >seq4039 Length=8492 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || ||||| || || ||||| ||| ||| |||| || | Sbjct 7087 AATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTGGAATCCTC 7146 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || | | | | |||||||||| || || || || || | ||| ||||| Sbjct 7147 TGACTCTATTGAAAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 7206 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | |||||||| ||||| || | |||||| | ||| | || || ||||| Sbjct 7207 GCAACGTTTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACTCTTGCAGACTACAA 7266 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| |||||||| ||||| | || | || ||||| Sbjct 7267 CATCCAAAAGGAATCCACTCTTCATTTGGTGCTCAGACTGCGTGGAGG 7314 >seq9092 Length=1269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || | || ||||| || |||||| |||| |||| || || Sbjct 45 ATGCAGATTTTCGTGAAGACGCTCACTGGCAAGACGATTACCCTCGAAGTGGAATCCTCA 104 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||||||||| ||| || || || || | || || || Sbjct 105 GACTCGATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 164 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | | |||||||| |||||||| | || ||| | || ||||||| ||||| Sbjct 165 CAGCGCTTGATCTTTGCAGGCAAACAGCTCGAGGATGGCCGCACGTTGGCCGACTACAAC 224 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || |||||||||||||| || ||||| | |||| || || || Sbjct 225 ATCCAGAAGGAATCTACTCTCCATCTGGTGCTTAGATTGCGTGGTGG 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410508450685916