Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3581 104 4e-17 seq21456 100 4e-16 seq37486 95.1 2e-14 seq21914 95.1 2e-14 seq4310 95.1 2e-14 seq49354 93.3 6e-14 seq48723 89.7 8e-13 seq23330 89.7 8e-13 seq16312 89.7 8e-13 seq17585 87.8 3e-12 seq49444 84.2 3e-11 >seq3581 Length=10373 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || ||||| || || || | ||| | || | | Sbjct 5042 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCT 5101 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| | ||| ||| | || ||||| ||||| ||||| || || || ||||||||||| Sbjct 5102 GATTCCATTGAAAATGTGAAGCAGAAGATTCAGGATAAGGAGGGCATCCCACCTGATCAG 5161 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || |||||||| || || | |||||| | || || || | || || || Sbjct 5162 CAACGTCTGATCTTTGCAGGCAAGCAGCTCGAGGATGGCCGTACCTTGGCTGACTACAAC 5221 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | || ||||| | ||| | | |||||||| Sbjct 5222 ATTCAGAAGGAATCTACCCTTCACTTGGTCCTTCGTCTGAGGGGTGGTAT 5271 >seq21456 Length=1382 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || || || || || || || ||| | || | ||| | | Sbjct 249 ATGCAGATCTTTGTAAAAACGCTGACTGGAAAGACCATTACTCTGGAAGTAGAATCCTCT 308 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| || ||| | || ||||| || ||||||||||| || || ||||||||||| Sbjct 309 GATAGCATCGAGAATGTGAAGCAGAAGATCCAAGATAAAGAGGGCATTCCACCTGATCAG 368 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || |||||||| || || | ||||| | || ||| ||| || || || Sbjct 369 CAACGCTTGATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGCACACTAGCTGACTACAAC 428 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || ||| | || ||||| | ||||| |||| || || Sbjct 429 ATCCAGAAGGAGTCCACTCTTCACTTGGTACTTCGTTTGAGAGGAGGCAT 478 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || ||||| || || ||| | || ||||| | | Sbjct 477 ATGCAGATTTTTGTCAAGACATTGACTGGCAAGACCATCACTTTGGAAGTTGAATCCTCT 536 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | || ||||| || || || || || || || ||||||||||| Sbjct 537 GACTCGATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCACCTGATCAG 596 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | ||||| | || || | | ||||| || Sbjct 597 CAGCGCCTCATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCTGATTACAAC 656 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||| ||||| || | |||||||| Sbjct 657 ATCCAAAAGGAATCCACCCTTCATTTGGT 685 >seq37486 Length=869 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||| | || ||||| ||||| ||| | || | ||| | | Sbjct 327 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACTATCACTCTGGAAGTCGAATCTTCT 268 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| || || | || ||||| || || || || || || || || |||||||| Sbjct 267 GATAGCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 208 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||||||||| ||||| | || ||| | || || | | ||| || || Sbjct 207 CAACGCTTGATTTTTGCAGGCAAACAGCTTGAAGATGGCCGCACCCTTGCAGACTACAAC 148 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| ||| | || ||||| | || | |||||||||| Sbjct 147 ATCCAAAAGGAATCTACTCTCCACTTGGTCCTTCGCCTGAGAGGTGGTAT 98 >seq21914 Length=1598 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 124611 AATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATT 124670 ||| | |||||||| ||||||||||| || || || ||||| || || || | | || Sbjct 464 AATGTTAAACAGAAGATTCAAGATAAGGAGGGCATTCCACCCGACCAGCAGCGCTTGATC 523 Query 124671 TTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAA 124730 |||||||| ||||| | |||||| | || || | | ||| ||||| || ||||| || Sbjct 524 TTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTGCAGACTATAACATCCAAAAGGAG 583 Query 124731 TCAACTTTGCATTTGGT 124747 || ||| |||||||||| Sbjct 584 TCCACTCTGCATTTGGT 600 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| | || ||||| || || || | || | || ||| Sbjct 164 ATGCAAATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTCGAGAGCTC- 222 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||| || | || ||||| || || || || || || || ||||||||||| Sbjct 223 TGACTCAATCGAAAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCACCTGATCA 282 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || |||||||| ||||| | |||||| | || || | | || ||||| Sbjct 283 GCAACGTTTGATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACCCTTGCTGACTATAA 342 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | || ||||| | ||||| ||||||| || Sbjct 343 CATCCAGAAGGAATCTACCCTTCACTTGGTGCTTCGTTTGAGAGGTGGCAT 393 >seq4310 Length=8047 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || ||||| ||||| || | || | ||| | | Sbjct 264 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACTATTACCCTCGAAGTGGAATCCTCT 205 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | |||||||| || ||||| || || || || |||||||||||| Sbjct 204 GACTCTATTGAAAACGTCAAACAGAAGATCCAAGACAAGGAGGGCATTCCACCTGATCAA 145 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || || || | |||||| | || || ||| || || || Sbjct 144 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACGCTAGCTGACTACAAC 85 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || | |||||||| | ||| || |||| || || Sbjct 84 ATCCAAAAGGAATCCACCCTCCATTTGGTACTGCGTCTAAGAGGAGGCAT 35 >seq49354 Length=412 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124540 TGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATG 124599 |||| || || | ||||| || || ||||| || || || | || | ||| | | Sbjct 412 TGCAGATTTTCGTGAAGACGCTCACTGGCAAGACGATTACCCTCGAAGTGGAATCCTCAG 353 Query 124600 ATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAAC 124659 | | ||| ||| | || || || |||||||| || || || || ||||||||||||| Sbjct 352 ACTCGATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCTGATCAAC 293 Query 124660 AAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATA 124719 || | || || |||||||| ||||| | || || | || || || | || || || | Sbjct 292 AACGTCTGATCTTTGCAGGCAAACAGCTTGAAGACGGCCGTACCTTGGCCGACTACAACA 233 Query 124720 TTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| || || || ||| | |||||||| | ||||| |||| || || Sbjct 232 TTCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTTTGAGAGGAGGCAT 184 >seq48723 Length=522 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| |||| || | || || || || || || | ||| | ||| | Sbjct 513 ACTATGCAGATCTTTGTAAAAACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCC 454 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| | ||| || | || ||||| ||||||||||| || || || || |||||| Sbjct 453 TCTGACTCTATTGAAAACGTCAAGCAGAAGATTCAAGATAAGGAGGGCATTCCCCCTGAT 394 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||||| | ||||| || || || || || | || ||| | || || | | ||| || Sbjct 393 CAACAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTTGCAGACTAC 334 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || || ||||| ||||| ||| | |||||||| Sbjct 333 AACATCCAAAAGGAATCCACTCTTCATTTGGT 302 >seq23330 Length=2255 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 124611 AATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATT 124670 ||| | || ||||| || || ||||| |||||||| ||||||||||| || | || || Sbjct 2126 AATGTGAAGCAGAAGATCCAGGATAAGGAAGGTATTCCACCTGATCAGCAGCGTCTCATC 2067 Query 124671 TTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAA 124730 |||||||| || || | |||||| | || || || | || || || |||||||| ||| Sbjct 2066 TTTGCAGGCAAGCAGCTGGAGGATGGCCGTACCTTGGCCGACTACAACATTCAAAAGGAA 2007 Query 124731 TCAACTTTGCATTTGGT 124747 || || | ||| |||| Sbjct 2006 TCCACCCTTCATCTGGT 1990 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || ||||| ||||| ||| | || | || ||| Sbjct 1970 ATGCAGATCTTTGTGAAGACGCTCACTGGCAAGACTATCACTTTGGAAGTGGAGAGCTC- 1912 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| |||| || | || ||||| || || || || || || || || |||||||| Sbjct 1911 TGACTCAATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 1852 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || |||||||| || ||| | || ||| |||| || | | ||| || || Sbjct 1851 ACAGCGCCTCATCTTTGCAGGCAAGCAACTCGAAGATGGTCGCACCCTGGCAGACTACAA 1792 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || || || ||| | ||| |||| | | || || ||||| Sbjct 1791 CATCCAGAAGGAGTCCACTCTCCATCTGGTGCTTAGATTGCGTGGTGG 1744 >seq16312 Length=2383 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || || || || || | ||| | ||| | | Sbjct 1856 ATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTGGAATCCTCT 1915 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | || ||||| |||||||| || || || || ||||||||||| Sbjct 1916 GACTCTATTGAAAACGTGAAGCAGAAGATTCAAGACAAGGAGGGCATCCCACCTGATCAG 1975 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || |||||||| ||||| | |||||| | || || | | || || || Sbjct 1976 CAGCGTCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACCCTCGCTGACTACAAC 2035 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| ||||| || | || ||||| Sbjct 2036 ATTCAAAAGGAATCTACCCTCCACTTGGT 2064 >seq17585 Length=2016 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 124611 AATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATT 124670 ||| | || ||||| |||||||| || || ||||| ||||||||||| || | |||||| Sbjct 1989 AATGTGAAGCAGAAGATTCAAGACAAGGAGGGTATTCCACCTGATCAGCAGCGCCTTATT 1930 Query 124671 TTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAA 124730 || || || || || | ||||| | || || || | || || || || ||||| || Sbjct 1929 TTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAACATCCAAAAGGAG 1870 Query 124731 TCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||| | |||||||| | ||| | |||| || || Sbjct 1869 TCCACTCTTCATTTGGTGCTTCGTCTTAGAGGAGGCAT 1832 >seq49444 Length=335 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 124615 TAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT-GA-TCAACAAAGGCTTATTTT 124672 |||||||||| ||||||||||| || || || |||||| || |||||| | || || || Sbjct 119 TAAAACAGAAGATTCAAGATAAGGAGGGCATCCCACCTCGACTCAACAGCGTCTCATCTT 178 Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732 |||||| || || | |||||| | || || | | ||| || || || ||||| ||||| Sbjct 179 TGCAGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAACATCCAAAAGGAATC 238 Query 124733 AACTTTGCATTTGGT 124747 || | || ||||| Sbjct 239 TACCCTCCACTTGGT 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754912128339200