Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq35896 86.0 1e-11 seq24165 86.0 1e-11 seq5862 86.0 1e-11 >seq35896 Length=749 Score = 86.0 bits (94), Expect = 1e-11 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 157249 GGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAAT 157308 || |||| ||||||| |||| | ||||||| || || ||||| ||||| || ||||| Sbjct 654 GGCCTTGGCGTACTCGCCCACCTTCCTCTCAAAGAAATTCGTCTTGCCCTGTAGCGAAAT 595 Query 157309 CATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTT 157368 ||| |||||||| ||| ||||||||| ||||| |||||| | | || || | Sbjct 594 CATTTCCATCCAAGGGAAGGGGTTGGCGGCATTGTAGACCTTGGGGCATCCAAGAGCGAC 535 Query 157369 CAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGAT 157428 || |||||||||||||| ||||| | |||| || || | || || || Sbjct 534 GAGAAGCCTGTCCGCCACAAACTCAATGTATTGACACATGAGCTCGGCGTTCATTCCAAT 475 Query 157429 GAGCGCGACGGGAAGCGCCGACGAAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAA 157488 ||| | || ||||| | | || | |||||| ||||| ||||| | ||||| Sbjct 474 GAGGCCAACTGGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGAT 415 Query 157489 AATTT 157493 |||| Sbjct 414 GATTT 410 >seq24165 Length=2677 Score = 86.0 bits (94), Expect = 1e-11 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 157249 GGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAAT 157308 || |||| ||||||| |||| | ||||||| || || ||||| ||||| || ||||| Sbjct 2610 GGCCTTGGCGTACTCGCCCACCTTCCTCTCAAAGAAATTCGTCTTGCCCTGTAGCGAAAT 2551 Query 157309 CATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTT 157368 ||| |||||||| ||| |||||||| |||||| |||||| | | || || | Sbjct 2550 CATTTCCATCCAAGGGAAGGGGTTGGCAGCGTTGTAGACCTTGGGGCATCCAAGAGCGAC 2491 Query 157369 CAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGAT 157428 || |||||||||||||| ||||| | |||| || || | || || || Sbjct 2490 GAGAAGCCTGTCCGCCACAAACTCAATGTATTGGCACATGAGCTCGGCGTTCATTCCAAT 2431 Query 157429 GAGCGCGACGGGAAGCGCCGACGAAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAA 157488 ||| | || ||||| | | || | |||||| ||||| ||||| | ||||| Sbjct 2430 GAGGCCAACTGGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGAT 2371 Query 157489 AATTT 157493 |||| Sbjct 2370 GATTT 2366 >seq5862 Length=2677 Score = 86.0 bits (94), Expect = 1e-11 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 157249 GGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAAT 157308 || |||| ||||||| |||| | ||||||| || || ||||| ||||| || ||||| Sbjct 2176 GGCCTTGGCGTACTCGCCCACCTTCCTCTCAAAGAAATTCGTCTTGCCCTGTAGCGAAAT 2117 Query 157309 CATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTT 157368 ||| |||||||| ||| ||||||||| ||||| |||||| | | || || | Sbjct 2116 CATTTCCATCCAAGGGAAGGGGTTGGCGGCATTGTAGACCTTGGGGCATCCAAGAGCGAC 2057 Query 157369 CAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGAT 157428 || |||||||||||||| ||||| | |||| || || | || || || Sbjct 2056 GAGAAGCCTGTCCGCCACAAACTCAATGTATTGACACATGAGCTCGGCGTTCATTCCAAT 1997 Query 157429 GAGCGCGACGGGAAGCGCCGACGAAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAA 157488 ||| | || ||||| | | || | |||||| ||||| ||||| | ||||| Sbjct 1996 GAGGCCAACTGGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGAT 1937 Query 157489 AATTT 157493 |||| Sbjct 1936 GATTT 1932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072974042942592