Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq4039 86.0 5e-12 seq26564 84.2 2e-11 >seq4039 Length=8492 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 24826 AACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAA 24885 |||| ||||| || || || || || || || || || || || ||| |||| || ||| Sbjct 7082 AACACAATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTGGAA 7141 Query 24886 TCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTT 24945 || ||| | | |||| || ||| |||| || | || || ||| | || | Sbjct 7142 TCCTCTGACTCTATTGAAAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCT 7201 Query 24946 GACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGAT 25005 || ||||||||||| || | ||| ||||| || || |||||| | ||| | || Sbjct 7202 GATCAGCAACGTTTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACTCTTGCAGAC 7261 Query 25006 TACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAA 25062 |||| ||| || || || |||| |||||||| ||| | || |||| ||||| ||| Sbjct 7262 TACAACATCCAAAAGGAATCCACTCTTCATTTGGTGCTCAGACTGCGTGGAGGACAA 7318 >seq26564 Length=912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| ||||| || || ||||| || || ||| | || ||||| || Sbjct 48 CATGCAGATCTTTGTAAAAACTTTGACTGGCAAGACCATTACCCTTGAGGTCGAGTCCTC 107 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | || | ||| ||| | || ||| | ||||| || | || |||||| Sbjct 108 TGACAGCATCGAGAATGTGAAGCAGAAGATTCAAGACAAAGAGGGTATCCCCCCTGACCA 167 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||||||| | || | ||| |||||||| || || || | || | || |||| Sbjct 168 GCAACGTCTCATCTTTGCAGGCAAACAGCTCGAGGACGGCCGCACACTAGCAGACTACAA 227 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| ||||| ||| | || || ||| | || || || |||| || ||| Sbjct 228 CATCCAGAAGGAGTCTACTCTGCATCTTGTATTGCGCCTGCGTGGGGGT 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418010381180480