Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5862 260 2e-64 seq24165 246 4e-60 seq24166 223 4e-53 seq663 181 1e-40 seq35896 170 2e-37 seq310 170 2e-37 >seq5862 Length=2677 Score = 260 bits (288), Expect = 2e-64 Identities = 418/599 (70%), Gaps = 6/599 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||||| || || ||||| ||||| || || ||||| || || ||| Sbjct 1881 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 1822 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||||||| | ||| ||||||||||| |||||| ||| || || |||||| Sbjct 1821 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAG 1762 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || || || || || | | |||||| | | | | |||| | | | Sbjct 1761 ATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTT 1702 Query 33759 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 ||||| | | ||||| || || ||||| || || |||||| |||||| |||||| Sbjct 1701 TCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCA 1642 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 || ||||| | || || | || || || ||||| || ||||| || |||| Sbjct 1641 TTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 1582 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 |||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | | Sbjct 1581 ATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGA 1522 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 ||||| || || || || || | || || || ||| |||| || |||||| || Sbjct 1521 ATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGCA 1462 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055 ||||| || ||||||||| |||||||| | ||| || |||| || || |||||| Sbjct 1461 GCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAA 1402 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 | |||| ||| || | || || || || |||||||||| || ||||| |||||| Sbjct 1401 TGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTT 1342 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || ||||| | ||| | | || | |||| || || | ||||| | |||||||| Sbjct 1341 TTGTACATCTCCCAAACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGATT 1283 >seq24165 Length=2677 Score = 246 bits (272), Expect = 4e-60 Identities = 417/601 (69%), Gaps = 10/601 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||||| || || ||||| ||||| || || || || || || ||| Sbjct 2315 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 2256 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||| | ||| || |||||||| |||||| ||| || || |||||| Sbjct 2255 CCTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAG 2196 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || || || || || | | |||||| | | | |||| | | | Sbjct 2195 ATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTT 2136 Query 33759 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 ||||| || | ||||| || || ||||| || ||| |||||| |||||| |||||| Sbjct 2135 TCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCA 2076 Query 33816 TTAAAGAGATAGtttttttCATTACTA--TCTTTAACATAAGTATCGATCAAAAGACTAT 33873 || ||||| | || || | || || || || ||||| || ||||| || || Sbjct 2075 TTGAAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAAT 2018 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | Sbjct 2017 ACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAG 1958 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 ||||| || || || || || | || || || ||| |||| || |||||| | Sbjct 1957 GGATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATG 1898 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 | ||||| || ||||||||| ||||||||| | ||| || |||| || || |||| Sbjct 1897 CAGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCC 1838 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 ||| ||| ||| || | || || || || |||||||||| || ||||| |||| Sbjct 1837 AATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCT 1778 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 |||| ||||| | ||| | | || | |||| || || | ||||| | ||||||| Sbjct 1777 TTTTGTACATCTCCCAAACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGAT 1718 Query 34174 T 34174 | Sbjct 1717 T 1717 >seq24166 Length=499 Score = 223 bits (246), Expect = 4e-53 Identities = 347/493 (70%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||| ||||| | ||| || |||||||| |||||| ||| || || |||||||| Sbjct 497 GGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATA 438 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT--- 33758 || || || || || || || | | |||||| | | | |||| | | | Sbjct 437 CCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTCA 378 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| || | ||||| || || ||||| || ||| |||||| |||||| |||||||| Sbjct 377 ATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATTG 318 Query 33819 AAGAGATAGtttttttCATTACTA--TCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 ||||| | || || | || || || || ||||| || ||||| || ||||| Sbjct 317 AAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACA 260 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 ||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | | Sbjct 259 TTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGA 200 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 |||| || || || || || | || || || ||| |||| || |||||| || | Sbjct 199 TCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCAG 140 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 34056 |||| || ||||||||| ||||||||| | ||| || |||| || || ||||||| Sbjct 139 CAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAAT 80 Query 34057 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 34116 ||| ||| || | || || || || |||||||||| || ||||| ||||||| Sbjct 79 GGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTTT 20 Query 34117 TATACATATTCCA 34129 | ||||| | ||| Sbjct 19 TGTACATCTCCCA 7 >seq663 Length=3190 Score = 181 bits (200), Expect = 1e-40 Identities = 428/639 (67%), Gaps = 8/639 (1%) Strand=Plus/Minus Query 63228 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63287 |||| || || | || ||||| ||||| | ||| ||||| | |||||| ||||| Sbjct 2005 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATAGATCG 1946 Query 63288 GGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTT 63346 || | ||| ||||| ||| || |||||||| | || || || || || || ||||| Sbjct 1945 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1887 Query 63347 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63406 ||| || || |||||| | | || || | ||||| || |||| || || || | | Sbjct 1886 TTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1827 Query 63407 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63466 ||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1826 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1767 Query 63467 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACG 63526 ||||||||| | |||||| ||| | || || || || ||| || | ||||| Sbjct 1766 CATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAGTTAGCAGCACG 1707 Query 63527 AATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63584 ||| | | | | || ||||||||||| || || | || || || || || || || Sbjct 1706 AATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACACTGT 1649 Query 63585 TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || | |||||||| || ||||||||||| || || |||||||| ||||| || | Sbjct 1648 TTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCACGAA 1589 Query 63645 GACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63704 || | || | | | || || ||||| || | || |||| || || || ||| | Sbjct 1588 GAAAGCTGTGGTCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAACAGT 1529 Query 63705 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT-ATATCCCATTGATGAATTCC 63763 | || || | ||||| || ||||| | | | ||| || || || ||| | ||| Sbjct 1528 TGTTGGGAGATCAGATTATATGTCTCCAACACAG-CTCTGATGTCAGTTTTATGCAGTCC 1470 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823 || || || ||||| |||||||| || |||||||| ||||| || ||| | ||| || Sbjct 1469 CACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCACAATCTTTCCGTTCAATTTGAA 1410 Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63862 | || || ||||| || || || |||||||| || Sbjct 1409 GAGATAAGAGCGCTCCAATGTCTTGAATCCAAAATAATT 1371 >seq35896 Length=749 Score = 170 bits (188), Expect = 2e-37 Identities = 252/356 (71%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||||| || || ||||| ||||| || || ||||| || || ||| Sbjct 359 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 300 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||||||||| | ||| ||||||||||| |||||| ||| || || |||||| Sbjct 299 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAG 240 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || || || || || | | |||||| | | | | |||| | | | Sbjct 239 ATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTT 180 Query 33759 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 ||||| | | ||||| || || ||||| || || |||||| |||||| |||||| Sbjct 179 TCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCA 120 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 || ||||| | || || | || || || ||||| || ||||| || |||| Sbjct 119 TTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 60 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 |||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| Sbjct 59 ATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTC 4 >seq310 Length=11085 Score = 170 bits (188), Expect = 2e-37 Identities = 438/660 (66%), Gaps = 8/660 (1%) Strand=Plus/Plus Query 63228 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63287 |||| || || | || ||||| ||||| | ||| ||||| | ||| || ||||| Sbjct 1367 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACAGATCG 1426 Query 63288 GGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTT 63346 || | ||| ||||| ||| || |||||||| | || || || || || || ||||| Sbjct 1427 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1485 Query 63347 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63406 ||| || || | ||| | | || || | ||||| || |||| || || || | | Sbjct 1486 TTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1545 Query 63407 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63466 ||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1546 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1605 Query 63467 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACG 63526 ||||||||| | |||||| || | || || || || ||| || | ||||| Sbjct 1606 CATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGAGTTAGCAGCACG 1665 Query 63527 AATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63584 ||| | | | | || ||||||||||| || || | || || || || || || || Sbjct 1666 AATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACACTGT 1723 Query 63585 TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || | |||||||| || ||||||||||| || || |||||||| ||||| || | Sbjct 1724 TTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCACGAA 1783 Query 63645 GACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63704 || | || | | | || || ||||| || | || |||| || || || ||| | Sbjct 1784 GAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAACAGT 1843 Query 63705 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT-ATATCCCATTGATGAATTCC 63763 | || || | ||||| || ||||| | | | ||| || || || ||| | ||| Sbjct 1844 TGTTGGGAGATCAGATTATATGTCTCCAACACCG-CTCTGATGTCAGTTTTATGCAGTCC 1902 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823 ||| || || ||||| |||||||| || || ||||| ||||| ||| ||| | ||| || Sbjct 1903 TACAGCAACTCGCATCAACATGTGTTGGGGCCTTTCCACAATCTTGCCGTTCAATTTGAA 1962 Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883 | || || ||||| || || || |||||||| || | ||||||| ||| || Sbjct 1963 GAGATAAGAGCGCTCCAATGTCTTGAAGCCAAAATAATTAAAGAGGAAGTCTCTTTCATA 2022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629364178564320