Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5862 215 7e-51 seq24165 205 1e-47 seq24166 181 1e-40 seq663 168 9e-37 seq310 154 2e-32 seq35896 138 1e-27 >seq5862 Length=2677 Score = 215 bits (238), Expect = 7e-51 Identities = 383/555 (69%), Gaps = 8/555 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||||| || || ||||| ||||| || || ||||| ||| || ||| Sbjct 1881 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 1822 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||||||||| | ||| ||||||||||| ||||| || | | | || || ||||| Sbjct 1821 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGAA 1763 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATG 36333 || || || || || || || || | | |||||| | | | | || | | | Sbjct 1762 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 1703 Query 36334 T---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | ||||| | | ||||| || || ||||| || || |||||| || || || || Sbjct 1702 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 1643 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 ||| ||||| | || || | || || || || || || ||||| || ||| Sbjct 1642 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 1583 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 ||||||||| |||||||| |||||||| || ||||| |||||||| || | |||||| | Sbjct 1582 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1523 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 36570 |||||| || || || || || | || || || ||| |||| || || ||| || Sbjct 1522 AATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGC 1463 Query 36571 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCA 36630 ||||| || ||||||||| |||||||| | ||| || | || || || ||||| Sbjct 1462 AGCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCA 1403 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 || |||| ||| || | || || || || |||||||||| || ||||| ||||| Sbjct 1402 ATGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTT 1343 Query 36691 TTTATACATATTCCA 36705 ||| ||||| | ||| Sbjct 1342 TTTGTACATCTCCCA 1328 >seq24165 Length=2677 Score = 205 bits (226), Expect = 1e-47 Identities = 382/557 (69%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||||| || || ||||| ||||| || || || || ||| || ||| Sbjct 2315 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 2256 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAA 36276 || ||||| ||||| | ||| || |||||||| ||||| || | | ||| || ||||| Sbjct 2255 CCTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTCCCCGAGAAGAA 2197 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC------TCCATAACCGGCACTGTC 36330 || || || || || || || || | | |||||| | || || || | Sbjct 2196 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTT 2137 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | ||||| || | ||||| || || ||||| || ||| |||||| || || || || Sbjct 2136 TTCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGC 2077 Query 36391 ATTAAAGAGATAGtttttttCATTACTA--TCTTTAACATATGTATCAATCAAAAGACTA 36448 ||| ||||| | || || | || || || || || || || ||||| || | Sbjct 2076 ATTGAAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAA 2019 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||||||||| |||||||| |||||||| || ||||| |||||||| || | |||||| Sbjct 2018 TACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCA 1959 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | ||||| || || || || || | || || || ||| |||| || || ||| Sbjct 1958 GGGATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGAT 1899 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 || ||||| || ||||||||| ||||||||| | ||| || | || || || ||| Sbjct 1898 GCAGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTC 1839 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 |||| ||| ||| || | || || || || |||||||||| || ||||| ||| Sbjct 1838 CAATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCC 1779 Query 36689 TTTTTATACATATTCCA 36705 ||||| ||||| | ||| Sbjct 1778 TTTTTGTACATCTCCCA 1762 >seq24166 Length=499 Score = 181 bits (200), Expect = 1e-40 Identities = 339/494 (69%), Gaps = 12/494 (2%) Strand=Plus/Minus Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAAAAT 36279 ||||| ||||| | ||| || |||||||| ||||| || | | ||| || ||||| || Sbjct 497 GGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTCCCCGAGAAGAAGAT 439 Query 36280 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC------TCCATAACCGGCACTGTCATG 36333 || || || || || || || | | |||||| | || || || | | Sbjct 438 ACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTC 379 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| || | ||||| || || ||||| || ||| |||||| || || || ||||| Sbjct 378 AATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATT 319 Query 36394 AAAGAGATAGtttttttCATTACTA--TCTTTAACATATGTATCAATCAAAAGACTATAC 36451 ||||| | || || | || || || || || || || ||||| || |||| Sbjct 318 GAAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 261 Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 36511 |||||||| |||||||| |||||||| || ||||| |||||||| || | |||||| | Sbjct 260 ATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGG 201 Query 36512 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 ||||| || || || || || | || || || ||| |||| || || ||| || Sbjct 200 ATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCA 141 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA 36631 ||||| || ||||||||| ||||||||| | ||| || | || || || |||||| Sbjct 140 GCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAA 81 Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 | ||| ||| || | || || || || |||||||||| || ||||| |||||| Sbjct 80 TGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTT 21 Query 36692 TTATACATATTCCA 36705 || ||||| | ||| Sbjct 20 TTGTACATCTCCCA 7 >seq663 Length=3190 Score = 168 bits (186), Expect = 9e-37 Identities = 431/644 (67%), Gaps = 18/644 (3%) Strand=Plus/Minus Query 66021 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 66080 |||| || || | || ||||| ||||| | ||| ||||| | |||||| ||||| Sbjct 2005 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATAGATCG 1946 Query 66081 GGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 66139 || | ||| ||||| ||| || | |||||||| || || || || || || ||||| Sbjct 1945 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1887 Query 66140 TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAAC 66199 ||| || || |||||| | | || || ||||| || |||| || || || | | Sbjct 1886 TTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1827 Query 66200 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 66259 ||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1826 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1767 Query 66260 CATTGGAATAATACCATTGGATGTACCATTGGT--CCCGGAGATA-TAGCTTCCACTTGC 66316 ||||||||| | ||| |||||||| || || || ||| || || || | || || Sbjct 1766 CATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GC 1710 Query 66317 ACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 66374 |||||| | | | | || ||||||||||| || || | || || || || || || Sbjct 1709 ACGAATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACAC 1652 Query 66375 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 66434 |||| | || ||||| || || ||||| || || || |||||||| ||||| || Sbjct 1651 TGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCAC 1592 Query 66435 CTAGACA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 66492 ||| | | |||| | | || || ||||| || | || |||| || || || | Sbjct 1591 GAAGAAAGCTGTGGTCTTGGC--GTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGA 1534 Query 66493 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT-ATATCCCATTGATGA 66551 || || || || | ||||| || ||||| | | | ||| || || || ||| Sbjct 1533 ACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACAG-CTCTGATGTCAGTTTTATGC 1475 Query 66552 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 66611 | ||| || || || ||||| |||||||| || |||||||| || ||||| ||| | | Sbjct 1474 AGTCCCACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCACAATCTTTCCGTTCAAT 1415 Query 66612 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 66655 || || | || || ||||| || || || |||||||| || Sbjct 1414 TTGAAGAGATAAGAGCGCTCCAATGTCTTGAATCCAAAATAATT 1371 >seq310 Length=11085 Score = 154 bits (170), Expect = 2e-32 Identities = 438/663 (66%), Gaps = 14/663 (2%) Strand=Plus/Plus Query 66021 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 66080 |||| || || | || ||||| ||||| | ||| ||||| | ||| || ||||| Sbjct 1367 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACAGATCG 1426 Query 66081 GGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 66139 || | ||| ||||| ||| || | |||||||| || || || || || || ||||| Sbjct 1427 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1485 Query 66140 TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAAC 66199 ||| || || | ||| | | || || ||||| || |||| || || || | | Sbjct 1486 TTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1545 Query 66200 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 66259 ||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1546 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1605 Query 66260 CATTGGAATAATACCATTGGATGTACCATTGGT--CCCGGAGATA-TAGCTTCCACTTGC 66316 ||||||||| | ||| ||||| || || || || ||| || || || | || || Sbjct 1606 CATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GC 1662 Query 66317 ACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 66374 |||||| | | | | || ||||||||||| || || | || || || || || || Sbjct 1663 ACGAATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACAC 1720 Query 66375 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 66434 |||| | || ||||| || || ||||| || || || |||||||| ||||| || Sbjct 1721 TGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCAC 1780 Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||| | || | | || || ||||| || | || |||| || || || ||| Sbjct 1781 GAAGAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAAC 1840 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT-ATATCCCATTGATGAAT 66553 || || || | ||||| || ||||| | | | ||| || || || ||| | Sbjct 1841 AGTTGTTGGGAGATCAGATTATATGTCTCCAACACCG-CTCTGATGTCAGTTTTATGCAG 1899 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 |||||| || || ||||| |||||||| || || ||||| || |||||| ||| | ||| Sbjct 1900 TCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTTTCCACAATCTTGCCGTTCAATTT 1959 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 66673 || | || || ||||| || || || |||||||| || | ||||||| ||| Sbjct 1960 GAAGAGATAAGAGCGCTCCAATGTCTTGAAGCCAAAATAATTAAAGAGGAAGTCTCTTTC 2019 Query 66674 GTA 66676 || Sbjct 2020 ATA 2022 >seq35896 Length=749 Score = 138 bits (152), Expect = 1e-27 Identities = 247/357 (69%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||||| || || ||||| ||||| || || ||||| ||| || ||| Sbjct 359 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 300 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||||||||| | ||| ||||||||||| ||||| || | | | || || ||||| Sbjct 299 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGAA 241 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATG 36333 || || || || || || || || | | |||||| | | | | || | | | Sbjct 240 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 181 Query 36334 T---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | ||||| | | ||||| || || ||||| || || |||||| || || || || Sbjct 180 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 121 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 ||| ||||| | || || | || || || || || || ||||| || ||| Sbjct 120 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 61 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 ||||||||| |||||||| |||||||| || ||||| |||||||| || | |||||| Sbjct 60 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657698964946960