Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5862 264 2e-65 seq24165 250 4e-61 seq24166 226 4e-54 seq663 190 3e-43 seq310 176 6e-39 seq35896 174 2e-38 >seq5862 Length=2677 Score = 264 bits (292), Expect = 2e-65 Identities = 421/600 (70%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||||| || || ||||| ||||| || || | ||| ||| || ||| Sbjct 1881 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 1822 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA-CGCAAATGACCCAGAAAAGAA 50078 || ||||||||||| | ||| ||||||||||| ||||| | || |||| || ||||| Sbjct 1821 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCC-GAGAAGAA 1763 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA----TAACTGGCGCTGTCAT 50134 ||| || || || ||||| || || || | |||||| | || ||| | | | | Sbjct 1762 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 1703 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | ||||| | | ||||| || || ||||| || || |||||| |||||| ||||| Sbjct 1702 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 1643 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||| ||||| | || || | || || || ||||| || ||||| || ||| Sbjct 1642 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 1583 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | Sbjct 1582 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1523 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 |||||| || || || || || |||| || || ||| |||| || || ||| || Sbjct 1522 AATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGC 1463 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 ||||| || ||||||||| |||||||| ||||| || | | || || ||||| Sbjct 1462 AGCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCA 1403 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 || |||| ||| || | ||||| || || |||||||||| || ||||| ||||| Sbjct 1402 ATGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTT 1343 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||| ||||| | ||| | | || | |||| || || | ||||| | |||||||| Sbjct 1342 TTTGTACATCTCCCAAACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGATT 1283 >seq24165 Length=2677 Score = 250 bits (276), Expect = 4e-61 Identities = 418/601 (70%), Gaps = 10/601 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||||| || || ||||| ||||| || || | || ||| || ||| Sbjct 2315 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 2256 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| ||||| | ||| || |||||||| ||||| || ||| || |||||| Sbjct 2255 CCTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAG 2196 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA----TAACTGGCGCTGTCATG 50135 || || || || ||||| || || || | |||||| || ||| | | | | Sbjct 2195 ATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTT 2136 Query 50136 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193 | ||||| || | ||||| || || ||||| || ||| |||||| |||||| |||||| Sbjct 2135 TCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCA 2076 Query 50194 TTAAAGAGATAGtttttttCATTACTA--TCTTTAACATAAGTATCGATCAAAAGACTAT 50251 || ||||| | || || | || || || || ||||| || ||||| || || Sbjct 2075 TTGAAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAAT 2018 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | Sbjct 2017 ACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAG 1958 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 ||||| || || || || || |||| || || ||| |||| || || ||| | Sbjct 1957 GGATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATG 1898 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431 | ||||| || ||||||||| ||||||||| ||||| || | | || || |||| Sbjct 1897 CAGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCC 1838 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 ||| ||| ||| || | ||||| || || |||||||||| || ||||| |||| Sbjct 1837 AATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCT 1778 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 50551 |||| ||||| | ||| | | || | |||| || || | ||||| | ||||||| Sbjct 1777 TTTTGTACATCTCCCAAACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGAT 1718 Query 50552 T 50552 | Sbjct 1717 T 1717 >seq24166 Length=499 Score = 226 bits (250), Expect = 4e-54 Identities = 348/493 (71%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||| ||||| | ||| || |||||||| ||||| || ||| || |||||||| Sbjct 497 GGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATA 438 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA----TAACTGGCGCTGTCATGT-- 50136 || || || ||||| || || || | |||||| || ||| | | | | | Sbjct 437 CCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTCA 378 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || | ||||| || || ||||| || ||| |||||| |||||| |||||||| Sbjct 377 ATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATTG 318 Query 50197 AAGAGATAGtttttttCATTACTA--TCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 ||||| | || || | || || || || ||||| || ||||| || ||||| Sbjct 317 AAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACA 260 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 ||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | | Sbjct 259 TTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGA 200 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 |||| || || || || || |||| || || ||| |||| || || ||| || | Sbjct 199 TCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCAG 140 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT 50434 |||| || ||||||||| ||||||||| ||||| || | | || || ||||||| Sbjct 139 CAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAAT 80 Query 50435 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 50494 ||| ||| || | ||||| || || |||||||||| || ||||| ||||||| Sbjct 79 GGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTTT 20 Query 50495 TATACATATTCCA 50507 | ||||| | ||| Sbjct 19 TGTACATCTCCCA 7 >seq663 Length=3190 Score = 190 bits (210), Expect = 3e-43 Identities = 423/625 (68%), Gaps = 16/625 (3%) Strand=Plus/Minus Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 ||||| ||||| | ||| |||| | |||||| ||||| || | ||| ||||| ||| Sbjct 1987 GACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATAGATCGGGTACCCACAGAGC-ATA 1929 Query 79978 -AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 || |||||||||| || ||||| || || || |||||||| || || |||||| | Sbjct 1928 GAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAGGAACTC 1869 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | || || | ||||| || |||| || || || | ||||| || ||| || Sbjct 1868 AAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGCTCCCTTTCTCTTGCCACC 1809 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 || ||||||| ||| | || |||| || || |||| |||||||||||| | ||| || Sbjct 1808 ACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAACATTGGAATTAGACCGTT 1749 Query 80157 GGATGTACCATTGGT--CCCGGAGATA-TAGCTTCCACTGGCACGAATAT--TACTAATT 80211 |||||| || || || ||| || || || | || |||||||| | | | | | Sbjct 1748 GGATGTTCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GCACGAATTTTGTGCACACT 1692 Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 80271 | ||||||||||| || || | || || || || || || |||| | || ||||| Sbjct 1691 G--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACACTGTTTAAGTGTGTCATAT 1634 Query 80272 ATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGAC 80329 || || |||||||| || || |||||||| ||||| || ||| | | |||| Sbjct 1633 ATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCACGAAGAAAGCTGTGGTCTT 1574 Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389 | | || || ||||| || | || |||| || || || ||| || || || | | Sbjct 1573 GGC--GTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAACAGTTGTTGGGAGATCA 1516 Query 80390 GATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCA 80449 |||| || ||||| | | | | || || || ||| | ||| || || || |||| Sbjct 1515 GATTATATGTCTCCAACACAGCTCTGATGTCAGTTTTATGCAGTCCCACAGCAACTCGCA 1456 Query 80450 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTT 80509 | |||||||| || |||||||| || ||||| || | ||| || | ||||| | Sbjct 1455 TCAACATGTGTTGGGGTCTTTCCACAATCTTTCCGTTCAATTTGAAGAGATAAGAGCGCT 1396 Query 80510 CCAAAGTTTTAAAACCAAAATAGTT 80534 |||| || || || |||||||| || Sbjct 1395 CCAATGTCTTGAATCCAAAATAATT 1371 >seq310 Length=11085 Score = 176 bits (194), Expect = 6e-39 Identities = 430/644 (67%), Gaps = 12/644 (2%) Strand=Plus/Plus Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 ||||| ||||| | ||| |||| | ||| || ||||| || | ||| ||||| ||| Sbjct 1385 GACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACAGATCGGGTACCCACAGAGC-ATA 1443 Query 79978 -AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 || |||||||||| || ||||| || || || |||||||| || || | ||| | Sbjct 1444 GAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAACTC 1503 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | || || | ||||| || |||| || || || | ||||| || ||| || Sbjct 1504 AAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGCTCCCTTTCTCTTGCCACC 1563 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 || ||||||| ||| | || |||| || || |||| |||||||||||| | ||| || Sbjct 1564 ACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAACATTGGAATTAGACCGTT 1623 Query 80157 GGATGTACCATTGGT--CCCGGAGATA-TAGCTTCCACTGGCACGAATAT--TACTAATT 80211 ||| || || || || ||| || || || | || |||||||| | | | | | Sbjct 1624 GGACGTGCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GCACGAATTTTGTGCACACT 1680 Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 80271 | ||||||||||| || || | || || || || || || |||| | || ||||| Sbjct 1681 G--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACACTGTTTAAGTGTGTCATAT 1738 Query 80272 ATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 80331 || || |||||||| || || |||||||| ||||| || ||| | || | | Sbjct 1739 ATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCACGAAGAAAGCTGTGGCCTT 1798 Query 80332 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 80391 || || ||||| || | || |||| || || || ||| || || || | ||| Sbjct 1799 GGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAACAGTTGTTGGGAGATCAGA 1858 Query 80392 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATT 80451 || || ||||| | | | | || || || ||| | |||||| || || ||||| Sbjct 1859 TTATATGTCTCCAACACCGCTCTGATGTCAGTTTTATGCAGTCCTACAGCAACTCGCATC 1918 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 |||||||| || || ||||| || |||||| || | ||| || | ||||| ||| Sbjct 1919 AACATGTGTTGGGGCCTTTCCACAATCTTGCCGTTCAATTTGAAGAGATAAGAGCGCTCC 1978 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 || || || || |||||||| || | ||||||| ||| || Sbjct 1979 AATGTCTTGAAGCCAAAATAATTAAAGAGGAAGTCTCTTTCATA 2022 >seq35896 Length=749 Score = 174 bits (192), Expect = 2e-38 Identities = 255/357 (71%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||||| || || ||||| ||||| || || | ||| ||| || ||| Sbjct 359 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 300 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA-CGCAAATGACCCAGAAAAGAA 50078 || ||||||||||| | ||| ||||||||||| ||||| | || |||| || ||||| Sbjct 299 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCC-GAGAAGAA 241 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA----TAACTGGCGCTGTCAT 50134 ||| || || || ||||| || || || | |||||| | || ||| | | | | Sbjct 240 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 181 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | ||||| | | ||||| || || ||||| || || |||||| |||||| ||||| Sbjct 180 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 121 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||| ||||| | || || | || || || ||||| || ||||| || ||| Sbjct 120 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 61 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| Sbjct 60 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717751700334160