Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq23330 84.2 2e-11 seq4039 82.4 6e-11 >seq23330 Length=2255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| ||| | ||||| ||||| |||| |||||| || | ||||| || | | Sbjct 1744 CCACCACGCAATCTAAGCACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCC 1803 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | ||| ||||| ||||| || | ||||||||||| | || Sbjct 1804 AGGGTGCGACCATCTTCGAGTTGCTTGCCTGCAAAGATGAGGCGCTGTTGATCAGGGGGA 1863 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| || ||||| | | | || ||| ||| ||| || Sbjct 1864 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATTGAGTC-AGAGCTCTCCAC 1922 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || || || || || |||||||| || ||||| Sbjct 1923 TTCCAAAGTGATAGTCTTGCCAGTGAGCGTCTTCACAAAGATCTGCAT 1970 >seq4039 Length=8492 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||||||| | ||||||||| | |||| |||||||| | ||||| || | Sbjct 7314 CCTCCACGCAGTCTGAGCACCAAATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCTGCA 7255 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || ||||||||||| ||||| || || ||||| | || Sbjct 7254 AGAGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAAACGTTGCTGATCAGGGGGA 7195 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||| | ||| | ||| | || || Sbjct 7194 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAGTCAGAGGATTCCACC 7135 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || ||||| || | ||| ||||| || ||||||||| Sbjct 7134 TCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTCACGAAGATTTGCATT 7087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381101906428452