Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5862 215 7e-51 seq663 178 2e-39 seq310 163 4e-35 seq35896 150 2e-31 >seq5862 Length=2677 Score = 215 bits (238), Expect = 7e-51 Identities = 382/555 (69%), Gaps = 8/555 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||| || || ||||||||||| || || ||||| ||| || ||| Sbjct 1881 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 1822 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||||||||| | ||| ||||||||||| || || || | | | || || ||||| Sbjct 1821 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGA-ACAGAAGCTACCCGAGAAGAA 1763 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC------TCCATAACCGGCACTGTC 42237 ||| || || || || || || || | | |||||| | || || || | Sbjct 1762 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 1703 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | ||||| | | ||||| || || ||||| || || |||||| |||||| ||||| Sbjct 1702 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 1643 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||| ||||| | || || | || || || || || || ||||| || ||| Sbjct 1642 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 1583 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 |||||| || |||||||| |||||||| |||||||| |||||||| || | ||||| | Sbjct 1582 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1523 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 || ||| || || || || || |||| || || || |||| || || ||| || Sbjct 1522 AATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGC 1463 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCA 42537 ||||| || ||||||||| |||||||| | ||| || || | || | ||||| Sbjct 1462 AGCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCA 1403 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || |||| ||| || | ||||| || || | |||||||| || || || ||||| Sbjct 1402 ATGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTT 1343 Query 42598 TTTATACATATTCCA 42612 ||| ||||| | ||| Sbjct 1342 TTTGTACATCTCCCA 1328 >seq663 Length=3190 Score = 178 bits (196), Expect = 2e-39 Identities = 431/643 (67%), Gaps = 16/643 (2%) Strand=Plus/Minus Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 ||||| || || | || |||||| ||||| | | | |||| | |||||| ||||| Sbjct 2005 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATAGATCG 1946 Query 72043 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 72101 || | ||| ||||| ||| || |||||||||| || ||||| || || || ||||| Sbjct 1945 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1887 Query 72102 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 72161 ||| || || |||||| | | || || | ||||| || |||| || || || | | Sbjct 1886 TTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1827 Query 72162 TCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 72221 |||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1826 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1767 Query 72222 CATTGGAATAATACCATTGGATGCACCATTGGT--CCCGGAGATA-TAGCTTCCACTGGC 72278 ||||||||| | ||| ||||||| || || || ||| || || || | || || Sbjct 1766 CATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GC 1710 Query 72279 ACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 72336 |||||| | ||| | || ||||||||||| || || | || || || || || || Sbjct 1709 ACGAATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACAC 1652 Query 72337 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396 |||| | || ||||| || || ||||| || || || |||||||| ||||| || Sbjct 1651 TGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCAC 1592 Query 72397 CTAGACA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 ||| | | |||| | | || || ||||| || | || |||| || || || | Sbjct 1591 GAAGAAAGCTGTGGTCTTGGC--GTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGA 1534 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514 || || || || | ||||| || ||||| | | | | || || || ||| | Sbjct 1533 ACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACAGCTCTGATGTCAGTTTTATGCA 1474 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 ||| || || || ||||| ||||| || || |||||||| || ||||| || | || Sbjct 1473 GTCCCACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCACAATCTTTCCGTTCAATT 1414 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 72617 | || | || || ||||| || || || |||||||| || Sbjct 1413 TGAAGAGATAAGAGCGCTCCAATGTCTTGAATCCAAAATAATT 1371 >seq310 Length=11085 Score = 163 bits (180), Expect = 4e-35 Identities = 438/662 (66%), Gaps = 12/662 (2%) Strand=Plus/Plus Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCA 72042 ||||| || || | || |||||| ||||| | | | |||| | ||| || ||||| Sbjct 1367 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACAGATCG 1426 Query 72043 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 72101 || | ||| ||||| ||| || |||||||||| || ||||| || || || ||||| Sbjct 1427 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1485 Query 72102 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 72161 ||| || || | ||| | | || || | ||||| || |||| || || || | | Sbjct 1486 TTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1545 Query 72162 TCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 72221 |||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1546 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1605 Query 72222 CATTGGAATAATACCATTGGATGCACCATTGGT--CCCGGAGATA-TAGCTTCCACTGGC 72278 ||||||||| | ||| ||||| | || || || ||| || || || | || || Sbjct 1606 CATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GC 1662 Query 72279 ACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 72336 |||||| | ||| | || ||||||||||| || || | || || || || || || Sbjct 1663 ACGAATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACAC 1720 Query 72337 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396 |||| | || ||||| || || ||||| || || || |||||||| ||||| || Sbjct 1721 TGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCAC 1780 Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||| | || | | || || ||||| || | || |||| || || || ||| Sbjct 1781 GAAGAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAAC 1840 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || || || | ||||| || ||||| | | | | || || || ||| | | Sbjct 1841 AGTTGTTGGGAGATCAGATTATATGTCTCCAACACCGCTCTGATGTCAGTTTTATGCAGT 1900 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 ||||| || || ||||| ||||| || || || ||||| || |||||| || | ||| Sbjct 1901 CCTACAGCAACTCGCATCAACATGTGTTGGGGCCTTTCCACAATCTTGCCGTTCAATTTG 1960 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 || | || || ||||| || || || |||||||| || | ||||||| ||| Sbjct 1961 AAGAGATAAGAGCGCTCCAATGTCTTGAAGCCAAAATAATTAAAGAGGAAGTCTCTTTCA 2020 Query 72637 TA 72638 || Sbjct 2021 TA 2022 >seq35896 Length=749 Score = 150 bits (166), Expect = 2e-31 Identities = 249/357 (70%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||| || || ||||||||||| || || ||||| ||| || ||| Sbjct 359 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 300 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||||||||| | ||| ||||||||||| || || || | | | || || ||||| Sbjct 299 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGA-ACAGAAGCTACCCGAGAAGAA 241 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC------TCCATAACCGGCACTGTC 42237 ||| || || || || || || || | | |||||| | || || || | Sbjct 240 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 181 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | ||||| | | ||||| || || ||||| || || |||||| |||||| ||||| Sbjct 180 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 121 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||| ||||| | || || | || || || || || || ||||| || ||| Sbjct 120 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 61 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 |||||| || |||||||| |||||||| |||||||| |||||||| || | ||||| Sbjct 60 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670656030111440