Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq43562 102 6e-17 seq21456 98.7 7e-16 seq16312 98.7 7e-16 seq49647 96.9 3e-15 seq21227 95.1 9e-15 seq17585 93.3 3e-14 seq49259 91.5 1e-13 seq30220 89.7 4e-13 seq48723 87.8 1e-12 seq25074 86.0 5e-12 seq2942 86.0 5e-12 seq51456 82.4 6e-11 >seq43562 Length=381 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||| || | | || || || |||||||| || || || |||||||| ||| Sbjct 123 TGCCTCCTCTTAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 182 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | |||| || | || ||||||||| | |||||||| || || ||| | Sbjct 183 CCAAGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGAG 242 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || || ||||| || || ||||||| | || ||| |||| || | Sbjct 243 GAATGCCCTCCTTGTCCTGGATCTTCTGCTTTACATTCTCGATGCTATCAGAGGACTCGA 302 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || ||||||| |||||||||||| || ||||| Sbjct 303 CCTCAAGGGTAATGGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 351 >seq21456 Length=1382 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || || ||||| ||||| || || || |||||||| || Sbjct 477 TGCCTCCTCTCAAACGAAGTACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 418 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | |||| || | || ||||| || | ||||| ||||| || || || Sbjct 417 CTAGTGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAAGCGTTGCTGATCAGGTG 358 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || ||||| || || || ||| ||| | || ||| |||| ||||| Sbjct 357 GAATGCCCTCTTTATCTTGGATCTTCTGCTTCACATTCTCGATGCTATCAGAGGATTCTA 298 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||||| || || ||||| ||||||||||| || ||||| Sbjct 297 CTTCCAGAGTAATGGTCTTTCCAGTCAGCGTTTTTACAAAGATCTGCAT 249 >seq16312 Length=2383 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || | ||||| ||||| || || || |||||||| || | Sbjct 2310 CCACCTCTCAAACGAAGGACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCT 2251 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | ||| || |||||| | |||| ||||||||||||| |||| Sbjct 2250 AGTGTGCGACCATCCTCGAGTTGCTTACCAGCGAAGATCAGACGTTGTTGGTCGGGTGGA 2191 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| || || ||| || | || ||| | || ||| || Sbjct 2190 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGCTGTCAGATGATTCAACT 2131 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||||| || || || || ||||||||||| |||||||| Sbjct 2130 TCCAGAGTAATGGTCTTTCCAGTGAGCGTTTTTACAAAGATTTGCAT 2084 >seq49647 Length=441 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-G 15193 ||||||| || | | | ||| || ||||| ||||| || || || |||||||| || | Sbjct 174 TGCCACCCCTAAGGCGAAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 233 Query 15194 CTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTT 15253 | || | | |||| || | ||| || |||||| | |||| ||||||||||||| | Sbjct 234 CCAAGG-TGCGGCCGTCCTCGAGTTGCTTACCAGCGAAGATCAGACGTTGTTGGTCGGGT 292 Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 ||||| || || ||||| || || ||| || | || ||| | || ||| Sbjct 293 GGAATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGCTGTCAGATGATTCA 352 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | |||||||| || || || || ||||||||||| |||||||| Sbjct 353 ACTTCCAGAGTAATGGTCTTTCCAGTGAGCGTTTTTACAAAGATTTGCAT 402 >seq21227 Length=1716 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || | ||||| ||||| || || || |||||||| || | Sbjct 1546 CCACCTCTCAAACGAAGGACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCT 1487 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | ||| || |||||| | |||| ||||||||||||| |||| Sbjct 1486 AGTGTGCGACCATCCTCGAGTTGCTTACCAGCGAAGATCAGACGTTGTTGGTCGGGTGGA 1427 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| || || ||| || | || ||| |||| | || || Sbjct 1426 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGCTATCAGAGCTCTCCACT 1367 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || || ||||||||||| || ||||| Sbjct 1366 TCCAGAGTGATGGTCTTTCCAGTGAGCGTTTTTACAAAGATCTGCAT 1320 >seq17585 Length=2016 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCG- 15193 |||| ||||| | | | ||| || || ||||| || || ||| | |||||||| ||| Sbjct 1605 TGCCTCCTCTTAGGCGAAGAACCAAGTGGAGGGTAGATTCCTTTGG-ATGTTGTAGTCGA 1663 Query 15194 CTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTT 15253 | ||| | | |||| || | || ||||| || | |||||||| || || ||| Sbjct 1664 CGCAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCGGGA 1723 Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 ||||| || || ||||| || || ||||||| | || ||| |||| || Sbjct 1724 GGAATGCCCTCCTTGTCCTGGATCTTCTGCTTTACATTCTCGATGCTATCAGAGGACTCG 1783 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | ||||||||| || ||||||| |||||||||||| || ||||| Sbjct 1784 ACCTCAAGGGTAATGGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCAT 1833 >seq49259 Length=868 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| ||||| || || ||||| |||||||||||| | | | | || || Sbjct 263 ACTAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCATCCTCA 322 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | |||| ||| || ||||| ||||| || || || || | Sbjct 323 AGTTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCTTGA 382 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || |||| || | || ||| || || | ||||||||| || Sbjct 383 ATCTTCTGCTTGACGTTTTCAATAGAGTCAGAGGATTCCACCTCGAGGGTAATGGTCTTT 442 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| |||||||||||| || |||||| Sbjct 443 CCAGTCAAAGTTTTTACAAAGATCTGCATA 472 >seq30220 Length=1492 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | |||||| | || | ||| || || || || || || |||||||| ||| Sbjct 1106 CCACCCCGCAATCTAAGCACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCC 1165 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| | || ||||| || | |||||||||||||||||| ||| Sbjct 1166 AAGGTGCGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAAACGTTGTTGGTCGGGTGGG 1225 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| || || ||||||| | || ||| | || | || || Sbjct 1226 ATGCCCTCCTTGTCCTGGATCTTCTGCTTTACATTCTCAATGCTGTCCGAGCTCTCAACC 1285 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || |||| |||||| ||||| || ||||| Sbjct 1286 TCGAGGGTGATGGTCTTGCCAGTCAAAGTTTTGACAAAGATCTGCAT 1332 >seq48723 Length=522 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | || ||| | || |||||||| ||||| || ||||| |||||||| || Sbjct 284 CCTCCACGCAGTCTGAGCACCAAATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCTGCA 343 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || ||||||||| | || | || ||||| || ||| Sbjct 344 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGA 403 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || ||| || ||| || |||| || | || ||| || Sbjct 404 ATGCCCTCCTTATCTTGAATCTTCTGCTTGACGTTTTCAATAGAGTCAGAGGATTCCACC 463 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||||||||| || || |||| |||||||||||| || |||||| Sbjct 464 TCGAGGGTAATGGTCTTTCCAGTCAAAGTTTTTACAAAGATCTGCATA 511 >seq25074 Length=2226 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || || || |||||||| || ||||| |||||||| || Sbjct 213 TGCCACCTCTCAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTG 272 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| || | || ||||||||| | |||| ||| ||||| || || Sbjct 273 CAAGGGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCAGGTG 332 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| ||| || ||| || |||| || | || ||| | Sbjct 333 GGATGCCTTCCTTGTCCTGAATCTTATGCTTGACGTTTTCAATAGAGTCTGAGGATTCCA 392 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | |||| ||| || || |||| ||| || || || |||||||| || Sbjct 393 CCTCAAGAGTAACGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCATGTT 444 >seq2942 Length=1743 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| |||||| | || | ||| |||||||| || || || |||||||| || Sbjct 1410 CCTCCTCGCAATCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCA 1469 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | || ||||| || | ||||||||||| ||||| ||| Sbjct 1470 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCTGGAGGA 1529 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || || ||| ||| |||| || | || | || || Sbjct 1530 ATACCTTCCTTGTCCTGGATCTTCTGCTTCACATTTTCAATCGAGTCAGAGCTCTCCACT 1589 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || || ||||| || || ||||| |||||||| Sbjct 1590 TCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 1636 >seq51456 Length=269 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||||||||| | | ||| ||||| |||||||| || ||||| ||||||||||| || Sbjct 120 CCACCTCTCAAACGAAGAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCC 61 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTC 15249 || | | ||||||| | || ||||||||| | |||| ||| |||||||| Sbjct 60 AAG-GTACGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361924976685954