Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq17103 109 5e-19 seq21914 100 2e-16 seq20128 98.7 8e-16 seq3581 96.9 3e-15 seq110 96.9 3e-15 seq16312 95.1 1e-14 seq37486 91.5 1e-13 seq26564 91.5 1e-13 seq2 91.5 1e-13 seq49259 89.7 4e-13 seq49444 87.8 1e-12 >seq17103 Length=3258 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| |||||||||||||| || ||||| || || | ||| | | ||||| |||||| Sbjct 2532 TGCAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCTAGTGTGCGGCCATCCTCAAGCTGT 2473 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| ||| | ||||| | |||||||| ||| | ||||| ||||| ||| ||| Sbjct 2472 TTACCGGCAAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGAATCTTC 2413 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || || | | | | || | || |||| ||| | ||||||||| || ||||| Sbjct 2412 TGCTTCACATTCTCAATCGAGTC-CGAGCTCTCCACTTCCAAGGTAATGGTCTTTCCTGT 2354 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 |||||||| ||||| || ||||| Sbjct 2353 CAAAGTTTTTACAAAGATCTGCAT 2330 >seq21914 Length=1598 Score = 100 bits (110), Expect = 2e-16 Identities = 166/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 18803 ttttATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATA 18862 ||||||||| ||||| ||||| || | ||||| |||| || ||||||||||| || Sbjct 627 TTTTATTGT---CCTCCACGCAATCTGAGCACCAAATGCAGAGTGGACTCCTTTTGGATG 571 Query 18863 TTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGC 18922 || || || || | || | | |||||||||||||| || ||| | || | | |||| Sbjct 570 TTATAGTCTGCAAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAGATCAAGCGCTGC 511 Query 18923 TGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCG 18982 || || || | |||||| || || ||| |||||||| || | ||| | || Sbjct 510 TGGTCGGGTGGAATGCCCTCCTTATCTTGAATCTTCTGTTTAACATTCTCGATGCTGTCA 451 Query 18983 CCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | |||| ||| | ||| ||||| || || || || || ||||| ||||| ||||| Sbjct 450 GAGGACTCCACTTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 392 >seq20128 Length=1734 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || | | ||| | ||| | ||||| ||||||||||| ||||| || || Sbjct 1543 CCTCCTCTCAGGCGCAGCACGAGGTGAAGGGTAGATTCCTTTTGAATGTTGTAGTCGGCG 1484 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| |||||||| || ||| | || || | |||||| || ||| Sbjct 1483 AGGGTGCGGCCATCCTCAAGCTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCAGGGGGG 1424 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| || || ||| ||||| || || | ||| |||| |||| | Sbjct 1423 ATGCCCTCCTTATCTTGAATCTTCTGCTTCACATTCTCGATGCTATCAGAGCTCTCCACT 1364 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| || || || || |||||||||||||| || ||||| Sbjct 1363 TCAAGGGTAATCGTCTTGCCAGTCAAAGTTTTGACAAAGATCTGCAT 1317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||| ||||| || || |||||||| || | || | ||||||| Sbjct 1070 CACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCGGCGAGGGTACGGCCGTCCTC 1011 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || | || || | |||||||| ||| | |||||| ||||| Sbjct 1010 CAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTG 951 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || || | | | || || | ||| || | ||||| || || Sbjct 950 AATCTTTTGCTTGACGTTTTCAATAGAGTCTGAGGATTCCACCTCCAGAGTAATCGTCTT 891 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || |||||||| || || ||||||||| Sbjct 890 TCCAGTCAAAGTTTTCACGAAGATTTGCATT 860 >seq3581 Length=10373 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||| | | ||||| ||| | || ||||||||||| || ||||| || ||| Sbjct 4580 CCTCCCCTCAAGCGAAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCC 4521 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||||| ||||| || ||||||| | ||||||||| ||| Sbjct 4520 AAGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAAATAAGGCGCTGCTGATCAGGGGGA 4461 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| || || ||| ||||| || || | ||| | || | ||| | Sbjct 4460 ATGCCCTCCTTATCTTGAATCTTCTGCTTCACATTCTCGATGCTGTCAGACGACTCGACT 4401 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||| || ||||| || | || ||||| || || |||||| Sbjct 4400 TCCAGAGTAATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCATT 4353 >seq110 Length=9649 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||| ||||| || ||||||||||| || | || | | ||||| Sbjct 89 CACCAAGTGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCATCCTC 148 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| || | || || | ||||||||| ||| | |||||| ||||| Sbjct 149 GAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTG 208 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||||| || || | ||| |||| | |||| || | |||||| || || Sbjct 209 AATCTTCTGCTTCACATTCTCGATGCTATCAGAGGACTCCACCTCCAGGGTAATTGTCTT 268 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || ||||| || || || |||||||| || Sbjct 269 GCCAGTCAAAGTCTTCACGAAGATTTGCATGTT 301 >seq16312 Length=2383 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||| ||||||||||| ||||| || || | || | | |||||| Sbjct 2064 ACCAAGTGGAGGGTAGATTCCTTTTGAATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCC 2005 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | || || | ||||||||| || | |||||| ||||| | Sbjct 2004 AGCTGTTTGCCTGCAAAGATGAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGA 1945 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||||| || || | | | || || | ||| |||| ||| ||||| || Sbjct 1944 ATCTTCTGCTTCACGTTTTCAATAGAGTCAGAGGATTCCACCTCGAGGGTGATGGTCTTT 1885 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || ||||| || || || |||||||| || Sbjct 1884 CCAGTCAAAGTCTTCACGAAGATTTGCATGTT 1853 >seq37486 Length=869 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| | | ||||| ||| | || || ||||| || || ||||| || || Sbjct 329 CCTCCTCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCA 388 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||||||| || || ||| | || || | ||||||||| |||| Sbjct 389 AGGGTGCGACCATCCTCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGATCAGGGGGC 448 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | |||||| ||||| || ||||| || || | ||| || || | ||| ||| Sbjct 449 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATTCTCGATAGAGTC-CGAGGATTCCAC 507 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| ||| ||||| || || || || || ||||| || || |||||| Sbjct 508 CTCGAGGGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCATT 556 >seq26564 Length=912 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||||||||| || || ||||| || || | ||| | ||||||| |||||| Sbjct 251 TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGTGTGCGGCCGTCCTCGAGCTGT 192 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || || | ||||| || ||| | ||||||||||| ||| ||| Sbjct 191 TTGCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGGATACCCTCTTTGTCTTGAATCTTC 132 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || || | ||| | || | ||| || | ||||||||| || || || Sbjct 131 TGCTTCACATTCTCGATGCTGTCAGAGGACTCGACCTCAAGGGTAATGGTCTTGCCAGTC 72 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 |||||||| ||||| || ||||| Sbjct 71 AAAGTTTTTACAAAGATCTGCAT 49 >seq2 Length=13225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 18804 tttATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATAT 18863 || |||||| |||||| ||||| || | ||||| || | || |||||||| || || | Sbjct 12951 TTCATTGTTGTCCTCCACGCAATCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGT 13010 Query 18864 TGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCT 18923 |||| || |||| || | ||||||||||| || || ||| | || | | ||||| Sbjct 13011 TGTAGTCGGCCAAGGTACGACCATCCTCCAGCTGCTTGCCTGCAAAGATCAAACGCTGCT 13070 Query 18924 GATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGC 18983 |||| ||| | |||||| ||||| ||| ||||| || || | | | || || Sbjct 13071 GATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACATTCTCAATAGAGTCTG 13130 Query 18984 CAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | ||| ||||| |||||| || || || || | || || || || || ||||| Sbjct 13131 AGGATTCCACTTCGAGGGTAATCGTCTTGCCGGTGAGCGTCTTTACGAAGATCTGCAT 13188 >seq49259 Length=868 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || |||||||| |||| || | | ||||| || || ||||| Sbjct 275 GTAGACTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCATCCTCAAGTTGCTTACCA 334 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | |||||| || ||| | |||||| || || ||| ||||| || Sbjct 335 GCGAAGATCAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCTTGAATCTTCTGCTTG 394 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | || || | ||| |||| ||||||||| || || || |||||| Sbjct 395 ACGTTTTCAATAGAGTCAGAGGATTCCACCTCGAGGGTAATGGTCTTTCCAGTCAAAGTT 454 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| || ||||| Sbjct 455 TTTACAAAGATCTGCAT 471 >seq49444 Length=335 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||| |||||||| || ||||| || || | || | | ||||| Sbjct 254 CACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTC 195 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGA-TCCACG-GGCACGCCCTCTTTGTCG 18949 ||||| || || ||| | || || | ||| ||| || | | || | |||||| || || Sbjct 194 GAGCTGCTTGCCTGCAAAGATGAGACGCTGTTGAGTCGAGGTGGGATGCCCTCCTTATCT 135 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| ||||||||||| | ||| | || |||| ||| | ||||||||| Sbjct 134 TGAATCTTCTGTTTTACGTTCTCGATGCTGTCAGAGCTCTCCACTTCAAGGGTAATGGTC 75 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||||||||| | |||||| Sbjct 74 TTGCCAGTCAAAGTTTTGACAAAGA-TTGCAT 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414281800210036