Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq49354 87.8 1e-12 seq2942 82.4 5e-11 >seq49354 Length=412 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | ||||||||| || || ||| || ||||| || || ||| Sbjct 187 CCTCCTCTCAAACGAAGCACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 246 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| | || || | ||||| |||||||| |||| ||||| || || | || Sbjct 247 AAGGTACGGCCGTCTTCAAGCTGTTTGCCTGCAAAGATCAGACGTTGTTGATCAGGTGGG 306 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || || || ||| ||| ||||| ||||| | ||| | |||| | ||||| Sbjct 307 ATGCCCTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATCGAGTCTGAGGATTCCACT 366 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCA 44120 |||| ||||| || || || || | |||||||| || || |||| Sbjct 367 TCGAGGGTAATCGTCTTGCCAGTGAGCGTCTTCACGAAAATCTGCA 412 >seq2942 Length=1743 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| |||||| | ||||| ||| || ||| ||| || || || || || || | Sbjct 1410 CCTCCTCGCAATCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC-TGC 1468 Query 43955 AATTGA-CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | || |||| || | || || || ||||| ||||| ||||||||||| |||| Sbjct 1469 AAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCTGGAGG 1528 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || || || || || || || | ||| | || | |||||| Sbjct 1529 AATACCTTCCTTGTCCTGGATCTTCTGCTTCACATTTTCAATCGAGTCAGAGCTCTCCAC 1588 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || || | ||||||||||| ||||||||| Sbjct 1589 TTCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATG 1637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354528572067912