Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03-
13] 57,594 sequences; 86,214,659 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq50001 82.4 6e-11
seq21456 82.4 6e-11
>seq50001
Length=390
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
|||||| || || |||||||| || || |||||||| || ||| ||| ||| ||
Sbjct 298 CACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGTCCATCCTC 239
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
| || ||||| ||| | || | | ||| |||||| || | ||| || |||||
Sbjct 238 GAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTG 179
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
||| || || || || | ||| ||||| | ||| ||| | ||| ||||| ||
Sbjct 178 AATCTTCTGCTTTACATTCTCAATCGAATCAGATGACTCCACTTCGAGGGTGATGGTCTT 119
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||||||| || || ||||| || |||||
Sbjct 118 GCCGGTCAATGTCTTCACAAAGATCTGCAT 89
>seq21456
Length=1382
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040
|||||| || || || | ||||||||| || || ||||| ||||| ||||||||||| |
Sbjct 704 TCCTCCACGCAATCTGAGCACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCAGC 645
Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100
|| || || || | || || || ||| | || || | ||| ||||| ||
Sbjct 644 CAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCAAAGATGAGGCGCTGCTGATCAGGTGG 585
Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160
| ||| || ||||| || || || || || | ||| || || | |||
Sbjct 584 AATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATCGAGTCAGAGGATTCAAC 525
Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||| || ||||| ||||| ||||| || ||||||||||| |||||
Sbjct 524 TTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTGACAAAAATCTGCAT 477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419292680467914
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |