Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2170 113 7e-21 seq8711 109 9e-20 seq48682 102 1e-17 seq8440 102 1e-17 >seq2170 Length=7885 Score = 113 bits (124), Expect = 7e-21 Identities = 173/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| ||||| ||||||||||| || ||| | ||||| || | | || Sbjct 1998 CTGCGCGATAACATTCAAGGTATCACCAAGCCGGCCATCAGACGTCTCGCCAGGAGAGGC 2057 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| |||||||| || |||| || |||| || | || |||| | || Sbjct 2058 GGCGTGAAACGTATCTCTGGAATGATCTACGAGGAGACCCGAGGAGTACTGAAAGTGTTT 2117 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||| || ||| || ||||| ||| | ||||| ||| Sbjct 2118 TTGGAGAATGTGATTCGAGATGCAGTCACCTACACAGAGCATGCTCGCAGAAAGACCGTC 2177 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| |||| ||||| ||||| | ||||| || | | || ||||| || Sbjct 2178 ACAGCCATGGATGTCGTTTATGCCTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGGT 2237 Query 16694 AGTTAAT 16700 |||||| Sbjct 2238 GGTTAAT 2244 >seq8711 Length=2016 Score = 109 bits (120), Expect = 9e-20 Identities = 173/247 (70%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| |||||||||||||| ||| | ||||| || | | || Sbjct 1127 CTGCGCGATAACATCCAAGGCATCACCAAGCCAGCCATCAGACGTCTCGCCAGGAGAGGC 1186 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| ||||||| || |||| || |||| || | || |||| | || Sbjct 1187 GGCGTGAAACGTATCTCTGGTATGATCTACGAGGAGACCCGAGGAGTGCTGAAAGTGTTT 1246 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | ||||| || ||| || ||||| ||| | ||||| ||| Sbjct 1247 TTGGAGAATGTGATTCGAGATGCAGTCACCTACACAGAGCATGCTCGCAGAAAGACCGTC 1306 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| ||| ||||| ||||| | ||||| || | | || ||||| || Sbjct 1307 ACAGCCATGGAT-GCGTTTATGCTTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGGT 1365 Query 16694 AGTTAAT 16700 |||||| Sbjct 1366 GGTTAAT 1372 >seq48682 Length=892 Score = 102 bits (112), Expect = 1e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || ||||| ||||| ||||||||||| || ||| | ||||| || | | || Sbjct 67 TCTCCGCGACAACATTCAAGGTATCACCAAGCCTGCCATCAGACGTCTCGCCAGAAGGGG 126 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| ||||||||| | ||||| || | ||||| || | | | || | || | || Sbjct 127 TGGTGTCAAGCGTATTTCTGGTATGATTTATGAGGAAACCAGAGGCGTGCTCAAAGTATT 186 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| |||||| | ||||||| | |||||||| ||||| | | | ||||| || Sbjct 187 CTTGGAGAACGTTATTCGTGATGCTGTAACATATACCGAACACGCAAGAAGAAAGACAGT 246 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 || |||||||| | || ||||| Sbjct 247 AACTGCCATGGATGTGGTGTATGC 270 >seq8440 Length=3240 Score = 102 bits (112), Expect = 1e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || ||||| ||||| ||||||||||| || ||| | ||||| || | | || Sbjct 823 TCTCCGCGACAACATTCAAGGTATCACCAAGCCTGCCATCAGACGTCTCGCCAGAAGGGG 764 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| ||||||||| | ||||| || | ||||| || | | | || | || | || Sbjct 763 TGGTGTCAAGCGTATTTCTGGTATGATTTATGAGGAAACCAGAGGCGTGCTCAAAGTATT 704 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| |||||| | ||||||| | |||||||| ||||| | | | ||||| || Sbjct 703 CTTGGAGAACGTTATTCGTGATGCTGTAACATATACCGAACACGCAAGAAGAAAGACAGT 644 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 || |||||||| | || ||||| Sbjct 643 AACTGCCATGGATGTGGTGTATGC 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79022541402642