Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5862 260 2e-64 seq24165 246 4e-60 seq24166 226 4e-54 seq663 181 1e-40 seq35896 170 2e-37 seq310 167 3e-36 >seq5862 Length=2677 Score = 260 bits (288), Expect = 2e-64 Identities = 391/554 (71%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||||| || || ||||| ||||| || || | ||| ||| || ||| Sbjct 1881 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 1822 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||||||| | ||| ||||||||||| |||||| ||| || || |||||| Sbjct 1821 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAG 1762 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || || || || || | | |||||| | | | | |||| | | | Sbjct 1761 ATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTT 1702 Query 33481 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 ||||| | | ||||| || || ||||| || || |||||| |||||| |||||| Sbjct 1701 TCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCA 1642 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 || ||||| | || || | || || || ||||| || ||||| || |||| Sbjct 1641 TTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 1582 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 |||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | | Sbjct 1581 ATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGA 1522 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 ||||| || || || || || | ||||| || ||| |||| || || ||| || Sbjct 1521 ATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGCA 1462 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33777 ||||| || ||||||||| |||||||| | ||| || |||| || || |||||| Sbjct 1461 GCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAA 1402 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 | |||| ||| || | ||||| || || |||||||||| || ||||| |||||| Sbjct 1401 TGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTT 1342 Query 33838 TTATACATGTTCCA 33851 || ||||| | ||| Sbjct 1341 TTGTACATCTCCCA 1328 >seq24165 Length=2677 Score = 246 bits (272), Expect = 4e-60 Identities = 390/556 (70%), Gaps = 10/556 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||||| || || ||||| ||||| || || | || ||| || ||| Sbjct 2315 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 2256 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||| | ||| || |||||||| |||||| ||| || || |||||| Sbjct 2255 CCTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAG 2196 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || || || || || | | |||||| | | | |||| | | | Sbjct 2195 ATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTT 2136 Query 33481 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 ||||| || | ||||| || || ||||| || ||| |||||| |||||| |||||| Sbjct 2135 TCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCA 2076 Query 33538 TTAAAGAGATAGtttttttCATTACTA--TCTTTAACATAAGTATCGATCAAAAGACTAT 33595 || ||||| | || || | || || || || ||||| || ||||| || || Sbjct 2075 TTGAAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAAT 2018 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 |||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | Sbjct 2017 ACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAG 1958 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGG 33715 ||||| || || || || || | ||||| || ||| |||| || || ||| | Sbjct 1957 GGATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATG 1898 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33775 | ||||| || ||||||||| ||||||||| | ||| || |||| || || |||| Sbjct 1897 CAGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCC 1838 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 ||| ||| ||| || | ||||| || || |||||||||| || ||||| |||| Sbjct 1837 AATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCT 1778 Query 33836 TTTTATACATGTTCCA 33851 |||| ||||| | ||| Sbjct 1777 TTTTGTACATCTCCCA 1762 >seq24166 Length=499 Score = 226 bits (250), Expect = 4e-54 Identities = 348/493 (71%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||| ||||| | ||| || |||||||| |||||| ||| || || |||||||| Sbjct 497 GGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATA 438 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT--- 33480 || || || || || || || | | |||||| | | | |||| | | | Sbjct 437 CCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTCA 378 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| || | ||||| || || ||||| || ||| |||||| |||||| |||||||| Sbjct 377 ATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATTG 318 Query 33541 AAGAGATAGtttttttCATTACTA--TCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 ||||| | || || | || || || || ||||| || ||||| || ||||| Sbjct 317 AAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACA 260 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 ||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | | Sbjct 259 TTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGA 200 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 |||| || || || || || | ||||| || ||| |||| || || ||| || | Sbjct 199 TCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCAG 140 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 |||| || ||||||||| ||||||||| | ||| || |||| || || ||||||| Sbjct 139 CAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAAT 80 Query 33779 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 33838 ||| ||| || | ||||| || || |||||||||| || ||||| ||||||| Sbjct 79 GGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTTT 20 Query 33839 TATACATGTTCCA 33851 | ||||| | ||| Sbjct 19 TGTACATCTCCCA 7 >seq663 Length=3190 Score = 181 bits (200), Expect = 1e-40 Identities = 433/644 (67%), Gaps = 18/644 (3%) Strand=Plus/Minus Query 63177 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63236 |||| || || | || ||||| ||||| | ||| ||||| | |||||| ||||| Sbjct 2005 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATAGATCG 1946 Query 63237 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 63295 || | ||| ||||| ||| || |||||||||| || || || || || || ||||| Sbjct 1945 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1887 Query 63296 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63355 ||| || || |||||| | | || || | ||||| || |||| || || || | | Sbjct 1886 TTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1827 Query 63356 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63415 ||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1826 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1767 Query 63416 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATAT---AGCTTCCACTGGC 63472 ||||||||| | |||||| ||| | || || || || ||| | || | || || Sbjct 1766 CATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GC 1710 Query 63473 ACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63530 |||||| | | | | || ||||||||||| || || | || || || || || || Sbjct 1709 ACGAATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACAC 1652 Query 63531 CGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63590 |||| | |||||||| || || |||||||| || || |||||||| ||||| || Sbjct 1651 TGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCAC 1592 Query 63591 CTAGACA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 ||| | | |||| | | || || ||||| || | || |||| || || || | Sbjct 1591 GAAGAAAGCTGTGGTCTTGGC--GTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGA 1534 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT-ATATCCCATTGATGA 63707 || || || || | ||||| || ||||| | | | ||| || || || ||| Sbjct 1533 ACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACAG-CTCTGATGTCAGTTTTATGC 1475 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767 | ||| || || || ||||| |||||||| || |||||||| || ||||| ||| | | Sbjct 1474 AGTCCCACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCACAATCTTTCCGTTCAAT 1415 Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63811 || || | || || ||||| || || || |||||||| || Sbjct 1414 TTGAAGAGATAAGAGCGCTCCAATGTCTTGAATCCAAAATAATT 1371 >seq35896 Length=749 Score = 170 bits (188), Expect = 2e-37 Identities = 252/356 (71%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||||| || || ||||| ||||| || || | ||| ||| || ||| Sbjct 359 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 300 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||||||| | ||| ||||||||||| |||||| ||| || || |||||| Sbjct 299 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAG 240 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || || || || || | | |||||| | | | | |||| | | | Sbjct 239 ATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTT 180 Query 33481 ---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 ||||| | | ||||| || || ||||| || || |||||| |||||| |||||| Sbjct 179 TCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCA 120 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 || ||||| | || || | || || || ||||| || ||||| || |||| Sbjct 119 TTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 60 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 |||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| Sbjct 59 ATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTC 4 >seq310 Length=11085 Score = 167 bits (184), Expect = 3e-36 Identities = 440/663 (66%), Gaps = 14/663 (2%) Strand=Plus/Plus Query 63177 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63236 |||| || || | || ||||| ||||| | ||| ||||| | ||| || ||||| Sbjct 1367 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACAGATCG 1426 Query 63237 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 63295 || | ||| ||||| ||| || |||||||||| || || || || || || ||||| Sbjct 1427 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1485 Query 63296 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63355 ||| || || | ||| | | || || | ||||| || |||| || || || | | Sbjct 1486 TTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1545 Query 63356 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63415 ||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1546 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1605 Query 63416 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATAT---AGCTTCCACTGGC 63472 ||||||||| | |||||| || | || || || || ||| | || | || || Sbjct 1606 CATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GC 1662 Query 63473 ACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63530 |||||| | | | | || ||||||||||| || || | || || || || || || Sbjct 1663 ACGAATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACAC 1720 Query 63531 CGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63590 |||| | |||||||| || || |||||||| || || |||||||| ||||| || Sbjct 1721 TGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCAC 1780 Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||| | || | | || || ||||| || | || |||| || || || ||| Sbjct 1781 GAAGAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAAC 1840 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT-ATATCCCATTGATGAAT 63709 || || || | ||||| || ||||| | | | ||| || || || ||| | Sbjct 1841 AGTTGTTGGGAGATCAGATTATATGTCTCCAACACCG-CTCTGATGTCAGTTTTATGCAG 1899 Query 63710 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63769 |||||| || || ||||| |||||||| || || ||||| || |||||| ||| | ||| Sbjct 1900 TCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTTTCCACAATCTTGCCGTTCAATTT 1959 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63829 || | || || ||||| || || || |||||||| || | ||||||| ||| Sbjct 1960 GAAGAGATAAGAGCGCTCCAATGTCTTGAAGCCAAAATAATTAAAGAGGAAGTCTCTTTC 2019 Query 63830 GTA 63832 || Sbjct 2020 ATA 2022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622498724737040