Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq16312 116 4e-21 seq49647 104 2e-17 seq48723 102 8e-17 seq3581 96.9 3e-15 seq20128 95.1 1e-14 seq21227 93.3 4e-14 seq49444 91.5 1e-13 seq36738 87.8 2e-12 seq26564 87.8 2e-12 seq23330 87.8 2e-12 seq49259 86.0 6e-12 seq21914 84.2 2e-11 seq50001 82.4 7e-11 >seq16312 Length=2383 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | |||||||| | || || | ||| | |||||| Sbjct 2084 ATGCAAATCTTTGTAAAAACGCTCACTGGAAAGACCATTACTCTGGAAGTTGAATCATCT 2143 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||||||| | ||||| |||||||| ||||| || || || || ||||| ||| Sbjct 2144 GACAGCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCACCCGACCAA 2203 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||| | || || | || || || |||||||| |||| | | || ||| ||||| || Sbjct 2204 CAACGTCTGATCTTCGCTGGTAAGCAACTCGAGGATGGTCG-CACACTAGCTGACTACAA 2262 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || ||| | || |||||||| Sbjct 2263 CATCCAGAAGGAGTCCACTCTTCACCTGGTCCT 2295 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26764 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAAT 26823 |||| |||||| | || || || || || |||||||| | |||||| |||| | |||| Sbjct 1851 ACAACATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTGGAAT 1910 Query 26824 CAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCG 26883 | ||| | || || | || || || |||||| ||||| || || || || || | Sbjct 1911 CCTCTGACTCTATTGAAAACGTGAAGCAGAAGATTCAAGACAAGGAGGGCATCCCACCTG 1970 Query 26884 ATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACT 26943 |||| || | ||||| | | |||||||| || || |||| | | | || |||| Sbjct 1971 ATCAGCAGCGTCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACCCTCGCTGACT 2030 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||||||||| |||||||| |||| ||||||| | || || ||||| Sbjct 2031 ACAACATTCAAAAGGAATCTACCCTCCACTTGGTCCTTCGTCTGAGGGGAGG 2082 >seq49647 Length=441 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | |||||||| | || || | ||| | |||||| Sbjct 402 ATGCAAATCTTTGTAAAAACGCTCACTGGAAAGACCATTACTCTGGAAGTTGAATCATCT 343 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||||||| | ||||| |||||||| ||||| || || || || ||||| ||| Sbjct 342 GACAGCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCACCCGACCAA 283 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || || || |||||||| || | | | | | ||||| ||| Sbjct 282 CAACGTCTGATCTTCGCTGGTAAGCAACTCGAGGACGGCCGCACCTTGGCTGACTACAAC 223 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || ||| | || |||| || | ||||| || || Sbjct 222 ATCCAGAAGGAGTCCACTCTTCACTTGGTTCTTCGCCTTAGGGGTGG 176 >seq48723 Length=522 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| || |||||||| | || ||| |||| | ||||| Sbjct 510 ATGCAGATCTTTGTAAAAACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTCT 451 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || || | ||||| || |||||| || || || || || || || |||||| Sbjct 450 GACTCTATTGAAAACGTCAAGCAGAAGATTCAAGATAAGGAGGGCATTCCCCCTGATCAA 391 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||||| || || ||||||| | | | ||||| ||| Sbjct 390 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTTGCAGACTACAAC 331 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAA 26999 || ||||| ||||| ||| | ||| |||| || ||||| | |||||| || Sbjct 330 ATCCAAAAGGAATCCACTCTTCATTTGGTGCTCAGACTGCGTGGAGGACAA 280 >seq3581 Length=10373 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| || |||||||| | || ||| |||| | || || Sbjct 4582 ATGCAGATCTTTGTAAAAACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAGTCTTCT 4641 Query 26829 GACACCATCGAGCAAGTCAAA-CAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||| ||||||| | |||||| ||||||||| ||||| || || || || || ||||| Sbjct 4642 GACAGCATCGAGAACGTCAAAGCAAAAGATTCAAGACAAGGAGGGTATTCCCCCTGATCA 4701 Query 26888 -ACAAAGACTCA--TTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| | |||| || || ||||| || ||||| || | | | | || ||||| Sbjct 4702 GACAGCGCCTCAATCTTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCTGACTA 4761 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || |||||||| | || |||| || | | |||||||| Sbjct 4762 CAACATCCAGAAGGAATCTACCCTTCACTTGGTGCTTCGCTTAAGAGGAGG 4812 >seq20128 Length=1734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || ||||| || |||| ||| | ||| | || Sbjct 1317 ATGCAGATCTTTGTCAAAACTTTGACTGGCAAGACGATTACCCTTGAAGTGGAGAGCTCT 1376 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | ||||||| | || || || |||||| || || || || || || || || || Sbjct 1377 GATAGCATCGAGAATGTGAAGCAGAAGATTCAAGATAAGGAGGGCATCCCCCCTGACCAG 1436 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | | |||||||| || || |||| | | | || |||||| ||| Sbjct 1437 CAGCGTCTCATCTTTGCAGGCAAACAGCTTGAGGATGGCCGCACCCTCGCCGACTACAAC 1496 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| |||||||| | || || || ||| | || |||||||| Sbjct 1497 ATTCAAAAGGAATCTACCCTTCACCTCGTGCTGCGCCTGAGAGGAGG 1543 >seq21227 Length=1716 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | |||||||| | ||||| | ||| | || Sbjct 1320 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAGACCATCACTCTGGAAGTGGAGAGCTCT 1379 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | ||||||| | ||||| |||||||| ||||| || || || || ||||| ||| Sbjct 1380 GATAGCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCACCCGACCAA 1439 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||| | || || | || || || |||||||| |||| | | || ||| ||||| || Sbjct 1440 CAACGTCTGATCTTCGCTGGTAAGCAACTCGAGGATGGTCG-CACACTAGCTGACTACAA 1498 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || ||| | || |||||||| Sbjct 1499 CATCCAGAAGGAGTCCACTCTTCACCTGGTCCT 1531 >seq49444 Length=335 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| || ||||| || | || ||| | ||| | || Sbjct 44 ATGCAA-TCTTTGTCAAAACTTTGACTGGCAAGACCATTACCCTTGAAGTGGAGAGCTCT 102 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC-CGA-TC 26886 |||| ||||||| | || ||||| |||||| || || || || || || || ||| || Sbjct 103 GACAGCATCGAGAACGTAAAACAGAAGATTCAAGATAAGGAGGGCATCCCACCTCGACTC 162 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 |||| | ||||| | | ||||| || ||||| |||| | | | | ||||| | Sbjct 163 AACAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACA 222 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| ||||| |||||||| |||| |||| || | ||||||||||| Sbjct 223 ACATCCAAAAGGAATCTACCCTCCACTTGGTGCTCCGCCTTAGAGGAGG 271 >seq36738 Length=627 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | |||||| | ||||| || ||||| ||||| || || || || || |||||| Sbjct 19 GACTCAATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAA 78 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | | ||||| ||||||||||||| | | | | | ||||| ||| Sbjct 79 CAGCGCCTCATCTTTGCAGGCAAGCAACTCGAAGATGGTCGCACCCTGGCAGACTACAAC 138 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGA 26984 || || || || || ||| |||||||||| || ||| Sbjct 139 ATCCAGAAGGAGTCCACTCTCCATCTGGTGCTTAGA 174 >seq26564 Length=912 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| || ||||| || | || ||| | || | || || Sbjct 49 ATGCAGATCTTTGTAAAAACTTTGACTGGCAAGACCATTACCCTTGAGGTCGAGTCCTCT 108 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||||||| | || || || |||||| |||||||| || || || || || || Sbjct 109 GACAGCATCGAGAATGTGAAGCAGAAGATTCAAGACAAAGAGGGTATCCCCCCTGACCAG 168 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||| | ||||| | | |||||||| ||||| || | | || ||| ||||| || Sbjct 169 CAACGTCTCATCTTTGCAGGCAAACAGCTCGAGGACGGCCG-CACACTAGCAGACTACAA 227 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGT 26977 ||| || || || |||||| | ||||| || Sbjct 228 CATCCAGAAGGAGTCTACTCTGCATCTTGT 257 >seq23330 Length=2255 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | |||||| | ||||| || ||||| ||||| || || || || || |||||| Sbjct 1910 GACTCAATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAA 1851 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | | ||||| ||||||||||||| | | | | | ||||| ||| Sbjct 1850 CAGCGCCTCATCTTTGCAGGCAAGCAACTCGAAGATGGTCGCACCCTGGCAGACTACAAC 1791 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGA 26984 || || || || || ||| |||||||||| || ||| Sbjct 1790 ATCCAGAAGGAGTCCACTCTCCATCTGGTGCTTAGA 1755 >seq49259 Length=868 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| || |||||||| | || ||| |||| | ||||| Sbjct 471 ATGCAGATCTTTGTAAAAACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTCT 412 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || || | ||||| || |||||| || || || || || || || || || Sbjct 411 GACTCTATTGAAAACGTCAAGCAGAAGATTCAAGATAAGGAGGGCATTCCCCCTGACCAG 352 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || || || ||||| || |||| | | | | ||| || ||| Sbjct 351 CAGCGTCTGATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCACCTTGGCCGATTACAAC 292 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || ||||| ||||| | || || | ||||| ||||| Sbjct 291 ATCCAAAAGGAGTCTACCCTCCATTTAGTGCTTCGCCTTAGGGGAGG 245 >seq21914 Length=1598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || ||||| ||||| || | |||||| | ||| | || || Sbjct 392 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACCTTGGAAGTGGAGTCCTCT 451 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||||||| | || ||||| |||||| || || || || || || ||||| || Sbjct 452 GACAGCATCGAGAATGTTAAACAGAAGATTCAAGATAAGGAGGGCATTCCACCCGACCAG 511 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | | |||||||| || || |||| | | | ||||||||| Sbjct 512 CAGCGCTTGATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTTGCAGACTATAAC 571 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAA 26999 || ||||| || || ||| | ||| |||| || ||| | | |||||| || Sbjct 572 ATCCAAAAGGAGTCCACTCTGCATTTGGTGCTCAGATTGCGTGGAGGACAA 622 >seq50001 Length=390 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||||| || || || | |||||| ||||| | || ||| Sbjct 89 ATGCAGATCTTTGTGAAGACATTGACCGGCAAGACCATCACCCTCGAAGTGGAGTCATCT 148 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | || ||| | || || || |||||| ||||| || || || ||||||||||| Sbjct 149 GATTCGATTGAGAATGTAAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 208 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | | |||||| || ||||| |||| | | | ||||| ||| Sbjct 209 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACTCTGGCTGACTACAAC 268 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGA 26993 ||||| || |||||||| | || |||| || | || || ||| Sbjct 269 ATTCAGAAGGAATCTACCCTTCACTTGGTGCTTCGTCTCAGGGGA 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478317798971680