Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq663 360 5e-94 seq310 334 2e-86 >seq663 Length=3190 Score = 360 bits (398), Expect = 5e-94 Identities = 1203/1849 (65%), Gaps = 46/1849 (2%) Strand=Plus/Plus Query 363334 AATGCGGAAGTTTTCGATGACGTTATCAATTATGAGAAGGATCTCGAGTATGATATTTTC 363393 ||||| || || | || | | |||||| ||||| | ||| || | | || ||| Sbjct 1320 AATGCAGAGATTCTTGAGGGAGCTATCAAATATGAAAGGGACTTCCTCTTTAATTATTTT 1379 Query 363394 GGATATAAGACGATGGAGAAATCCTACCTATCTCGTATC-AATGGTGATATTGTTGAACG 363452 |||| ||||| ||||| || || || | || || || || | ||||| ||| | Sbjct 1380 GGATTCAAGACATTGGAGCGCTCTTATCTCT-TCAAATTGAACGGAAAGATTGTGGAAAG 1438 Query 363453 CCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGC 363512 || || || ||||| ||||| |||||| | || | ||| | || | || | Sbjct 1439 ACCCCAACACATGTTGATGCGAGTTGCTGTGGGACTGCATAAAACTGACATCAGAGCTGT 1498 Query 363513 GATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATG 363570 | | || |||||||| || ||| | ||| |||| || ||||| || ||| | Sbjct 1499 GTTGGAGACATATAATCTGATCTCCCAACAACTGT--TCACTCATGCCACTCCCACACTT 1556 Query 363571 TACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGAC 363630 | ||||||||| || | | |||||| | ||||| |||||||| | || ||| | || Sbjct 1557 TTCAATGCTGGCACGCCAAGACCACAGCTTTCTTCGTGCTTTCTCGTTAACATGCAAGAA 1616 Query 363631 GATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCA 363690 || ||| || || || | |||||||||||| | |||||| | |||||||||| ||| Sbjct 1617 GACAGCATAGAAGGGATATATGACACACTTAAACAGTGTGCTTTGATTTCCAAGAGTGCC 1676 Query 363691 GGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACA 363750 || ||||| ||| | | ||||| ||||||| ||| ||||| | ||||| Sbjct 1677 GGAGGAATAGGTCTCAGTGTGCACAAAATTCGTGCTGCTAACTCGTACATCAGGGGCACG 1736 Query 363751 GGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810 ||| || || || || |||| ||| | || |||| || | || || | ||| Sbjct 1737 AACGGAACATCCAACGGTCTAATTCCAATGTTGCGAGTGTACAACGACACAGCACGCTAC 1796 Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCAT 363870 || || || ||||| || ||| | || || || ||||| || ||||| |||||| || Sbjct 1797 GTAGATCAAGGTGGTGGCAAGAGAAAGGGAGCATTTGCAATCTATCTGGAGCCTTGGCAC 1856 Query 363871 GCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA----CACGGGAA--AAGAGGAATTG 363924 || || || |||||||| || ||||| |||||| ||||| || ||||| | | Sbjct 1857 GCGGACATCTTTGAGTTCCTGGAGCT---GAAAAAGAACCACGGCAAGGAAGAGCA---G 1910 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 || || | ||||| |||||||| || ||||| | || | |||||| || | |||||| Sbjct 1911 CGAGCCAGAGATCTCTTCTATGCTCTGTGGGTACCCGATCTATTTATGGAGAGAGTGGAG 1970 Query 363985 GCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 || || | || | |||||||| |||||||| | || ||||||||| || || Sbjct 1971 GCCGG-AGGAGACTGGTCACTGTTTTGCCCCAATGAGGCACCAGGTCTTCAAGACAAGTG 2029 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGC---TCGT-A 364099 ||| | || | || | || ||| | ||||| ||||| ||| ||| Sbjct 2030 GGGAGCTGAATTTGAGGAGCTGTACACACGCTATGAGCGCGAGGGCCGGGCAAGGCGTGC 2089 Query 364100 AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159 | ||| || || |||| |||||||| ||| |||| | || || ||||| || | Sbjct 2090 TGTCAA----GGCCCAAGAGCTTTGGTTTGCTATCTTGGAGGCTCAAATAGAGACTGGTA 2145 Query 364160 CACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTA 364219 | || |||||| | |||||||| |||||| || |||||||| |||||||| || | Sbjct 2146 CTCCTTATATGCTCTACAAAGACCACTGCAACGCGAAATCCAACCATCAGCACCTCGGCA 2205 Query 364220 CAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 | ||||| |||||| |||||||| ||| | | | ||| | ||| | || | Sbjct 2206 CCATTCAATGTTCCAACCTTTGTACCGAAATTGTCCAGTTCACATCACCCAAAGAAGTGG 2265 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--AAAAGATGGTACT----T 364333 |||||||||| ||||| || || || | || ||||| | ||| | | | | Sbjct 2266 CCGTATGTAATCTTGCTTCAATGGCTTTGCCTAAATTTGTGGACAAGGAGAAAATGATGT 2325 Query 364334 TTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTA 364393 |||| || || | || | ||| || | | | || |||| | ||||||| | Sbjct 2326 TTGATCATGAGAAGCTCTTTGAGGTGGTCAAGGTGGTCACGCGCAACTTGAACAAGGTGA 2385 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGA 364453 | ||| || || || ||| |||| |||||||||| || || | ||||| | || | Sbjct 2386 TAGACGTCAACTACTACCCAGTTCCAGAAGCCGAGCACTCCAACAGACGTCACAGGCCCA 2445 Query 364454 TTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT---TTATGATGCTCAAGATGGCATTTG 364510 |||||||||| ||||||||||| |||||||| | || | ||| | ||| | | | Sbjct 2446 TTGGTCTTGGCGTACAGGGCCTAGCTGACGTCTTCCTTCTCTTGCGC---ATGCCTTGGG 2502 Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 || || || || | || || || || ||||| ||||| || |||||||| Sbjct 2503 ATAGTGAAGAGGCACGCGCCCTCAACCGCGACATTTTTGAGACAATCTACTTTGCCGCCC 2562 Query 364571 TGACTGCTTCGTGTGATTTGGCAAA-AACCAAGGGAAAGTACTCTACTTATGAGGGGTC- 364628 | || | || ||| ||||||| | |||||| ||| | || | || || || Sbjct 2563 TCACATCATCTAATGAGCTGGCAAAGGAGCAAGGG-CCCTACCCCACATTTGCCGGCTCT 2621 Query 364629 CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATG 364688 ||||| | ||| || ||||||||| | |||||||| |||||| ||| || Sbjct 2622 CCCTCGAGCAAAGGTCTTCTT-CAGTTTGATATGTGGAATGTTGAGCCATCCTCCCGTTG 2680 Query 364689 GAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTAC 364748 | | |||| | || | | | || | |||| || || || | | || Sbjct 2681 GGATTGGGCGTCCCTCAAGGCAAGCATTGTGGAGCACGGCCTGCGAAATAGCTTACTTGT 2740 Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 || || ||||| |||||||||||| | ||||| || |||||||| |||||||| || || Sbjct 2741 CGCACCTATGCCGACGGCTTCTACTTCCCAGATACTGGGAAACAATGAGTGCTTTGAGCC 2800 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 | || ||| | || || | || | | ||||||| ||| |||| | || | Sbjct 2801 CTACACTTCCAACATCTACACAAGGCGCATCTTGGCCGGAGACTTTACGGTGATCAACGA 2860 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 || | ||| || || |||| || |||||| | |||||||||| | | Sbjct 2861 ACACTTGCTCAGAGACCTGATGGACCTGGGCCTGTGGAACCATGCCATGAAGAACAAGCT 2920 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACAT-TCCAGGATTTCCAGAAGATCTGAAGCCTA 364987 ||||||| ||||| |||||||| ||| | ||| | || || || |||| Sbjct 2921 CATCGCCCACAATGGCTCTGTGCAAGCCATAGACGAGATCCCTAG-CGAGCTCAAGCGCC 2979 Query 364988 TTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCG 365047 |||||||||| || ||||| ||| | ||| | |||| | || ||||| || || || | Sbjct 2980 TTTACAAAACTGTTTGGGAGATTCCTCAGCGTATTCTCTTGGACATGGCAGCTGACCGAG 3039 Query 365048 GTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCA 365107 || | ||| || |||||| | ||||||| ||| | |||| | | ||||| Sbjct 3040 CCGCGTACATCGACCAAAGCCAGAGCCTCAACGTATATATGGCCGAGCCCTCATTCGCCA 3099 Query 365108 AGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || || || ||||| || |||| ||||| || || ||||| || Sbjct 3100 GACTCACCTCGATGCACTTTTACGCATGGAAGAAGGGCCTAAAGACTGG 3148 >seq310 Length=11085 Score = 334 bits (370), Expect = 2e-86 Identities = 1065/1633 (65%), Gaps = 40/1633 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || ||||| || ||| | | ||||||||| || | | |||||| | ||||| Sbjct 1839 TTCACTCATGCCACTCCCACACTTTTCAATGCTGGCACGCCAAGGCCACAGCTTTCTTCG 1780 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||||| | || ||| | || || ||| || || || | |||||||||||| | Sbjct 1779 TGCTTTCTCGTTAACATGCAAGAAGACAGCATAGAAGGGATATATGACACACTTAAACAG 1720 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||||| | |||||||||| ||| || ||||| ||| | | ||||| ||||||| Sbjct 1719 TGTGCTTTGATTTCCAAGAGTGCCGGAGGAATAGGTCTCAGTGTGCACAAAATTCGTGCT 1660 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||| ||||| | ||||| || || || || || |||| ||| | || Sbjct 1659 GCTAACTCGTACATCAGGGGCACGAACGGCACGTCCAACGGTCTAATTCCAATGTTGCGA 1600 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||| || | || || | ||||| || || ||||| || ||| | || || || ||| Sbjct 1599 GTGTACAACGACACAGCACGCTACGTAGATCAAGGTGGTGGCAAGAGAAAGGGAGCATTT 1540 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA- 363905 || || ||||| |||||| || || || || ||||||||| | ||||| |||||| Sbjct 1539 GCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAGTTTTTGGAGCT---GAAAAAG 1483 Query 363906 ---CACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 ||||| || ||||| | ||| || | ||||| |||||||| || ||||| | Sbjct 1482 AACCACGGCAAGGAAGAGCA---GCGAGCCAGAGATCTCTTCTATGCTCTGTGGGTACCC 1426 Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGA 364019 || | || ||| || | |||||||| || | || | |||||||| |||||||| | || Sbjct 1425 GATCTGTTCATGGAGAGAGTGGAGGCCGG-AGGAGACTGGTCACTGTTTTGCCCCAATGA 1367 Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 ||||||||| || ||||| | || | || | || ||| | ||||| Sbjct 1366 GGCACCAGGTCTTCAAGACAAGTGGGGAGCTGAATTTGAGGAGCTGTACACACGCTATGA 1307 Query 364080 ATCGGAGGGAAAGGC---TCGT-AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCA 364135 ||||| ||| ||| | ||| || || |||| |||||||| ||| Sbjct 1306 GCGCGAGGGCCGGGCAAGGCGTGCTGTCAA----GGCCCAAGAGCTTTGGTTTGCTATCT 1251 Query 364136 TGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCA 364195 |||| | || || ||||| || || || |||||| | ||||| || |||||| | Sbjct 1250 TGGAGGCCCAAATAGAGACTGGTACTCCTTATATGCTCTACAAGGACCACTGCAACGCGA 1191 Query 364196 AGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTG 364255 | |||||||| |||||||| || || ||||| |||||| ||||| || ||| | Sbjct 1190 AATCCAACCATCAGCACCTCGGCACCATTCAATGTTCCAACCTTTGTACTGAAATTGTCC 1131 Query 364256 AATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT 364315 | | ||| | ||| | || ||||| ||||| ||||| || || || | || | Sbjct 1130 AGTTCACATCACCCAAAGAAGTGGCCGTGTGTAATCTTGCTTCAATGGCTTTGCCCAAAT 1071 Query 364316 TTGT--AAAAGATGGTACT----TTTGACCACCAGCATCTTTATGACGTAACCTATCATG 364369 |||| | ||| | | | ||||| || || | || | ||| || | | | Sbjct 1070 TTGTGGACAAGGAGAAAATGATGTTTGATCATGAGAAGCTCTTTGAGGTGGTCAAGGTGG 1011 Query 364370 CTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC 364429 || |||| | ||||||| || ||| || || || ||| |||| |||||||||| Sbjct 1010 TCACGCGCAACTTGAACAAGGTGATAGACGTCAACTACTACCCAGTTCCAGAAGCCGAGC 951 Query 364430 GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT--- 364486 || || | || || | || ||||| ||||| ||||||||||| |||||||| | Sbjct 950 ACTCCAACAGACGCCACAGGCCCATTGGCCTTGGCGTACAGGGCCTAGCTGACGTCTTCC 891 Query 364487 TTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCT 364546 || | ||| | ||| | | || || || || | || || || || | Sbjct 890 TTCTCTTGCGC---ATGCCTTGGGACAGCGAAGAGGCACGCGCCCTCAACCGCGACATTT 834 Query 364547 TTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAA-AACCAAGGGA 364605 |||| ||||| || |||||||| | || | || ||| ||||||| | |||||| Sbjct 833 TTGAGACAATCTACTTTGCCGCCCTCACATCATCTAATGAGCTGGCAAAGGAGCAAGGG- 775 Query 364606 AAGTACTCTACTTATGAGGGGTC-CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATG 364664 ||| | || | || || || ||| | | ||| | || |||||||| | || Sbjct 774 CCCTACCCCACATTTGCCGGCTCTCCCACGAGCAAAGGTCTACTT-CAGTTTGACATGTG 716 Query 364665 GAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCA 364724 ||||||| |||||| ||| ||| | |||| | || | | | || | |||| Sbjct 715 GAATGTCGAGCCATCCTCCCGTTGGGATTGGGCGTCCCTCAAGGCAAGCATTGTGGAGCA 656 Query 364725 TGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCT 364784 ||| || || | | || ||||| ||||| |||||||||||| | ||||| || Sbjct 655 CGGTCTGCGAAATAGCTTACTTGTCGCGCCTATGCCGACGGCTTCTACTTCCCAGATACT 596 Query 364785 CGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTC 364844 |||||||| |||||||| || || | || |||| | || || | || | | | Sbjct 595 GGGAAACAATGAGTGCTTTGAGCCCTACACGTCCAATATCTACACAAGGCGCATCTTGGC 536 Query 364845 CGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTG 364904 |||||| ||| |||| | || | || | ||| || || |||| || ||||| Sbjct 535 CGGAGACTTTACGGTGATCAACGAACACTTGCTCAGAGACCTGATGGACCTGGGCCTGTG 476 Query 364905 GGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACAT-TCCAG 364963 | | |||||||||| | |||||||| ||||| |||||||| ||| | Sbjct 475 GAACCATGCCATGAAGAACAAGCTCATCGCCCACAATGGCTCTGTGCAAGCCATAGACGA 416 Query 364964 GATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC 365023 ||| | || || || |||| |||||||||| || ||||| ||| | ||| | || Sbjct 415 GATCCCTAG-CGAGCTCAAGCGCCTTTACAAAACTGTTTGGGAGATTCCTCAGCGTATTC 357 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 || | || ||||| || || || | || | ||| || |||||| | ||||||| Sbjct 356 TCTTGGACATGGCAGCTGACCGAGCCGCGTACATCGACCAAAGCCAGAGCCTCAACGTAT 297 Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCG 365143 ||| | |||| | | ||||| || || || ||||| || |||| ||||| | Sbjct 296 ATATGGCCGAGCCCTCATTCGCCAGACTCACCTCGATGCACTTTTACGCATGGAAGAAGG 237 Query 365144 GTCTTAAGACAGG 365156 | || ||||| || Sbjct 236 GCCTAAAGACTGG 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302391825238508