Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq16312 91.5 1e-13 seq20128 86.0 5e-12 seq30220 82.4 6e-11 >seq16312 Length=2383 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || |||||||| || || || || | || ||||| ||||| ||| |||| ||| ||| Sbjct 1853 AACATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTGGAATCC 1912 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| || ||| | | || || || || ||| || || || ||| |||| |||| Sbjct 1913 TCTGACTCTATTGAAAACGTGAAGCAGAAGATTCAAGACAAGGAGGGCATCCCACCTGAT 1972 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| | || || | ||| |||||||| | || |||| | ||| | || || || Sbjct 1973 CAGCAGCGTCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACCCTCGCTGACTAC 2032 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||||||||| || ||||| Sbjct 2033 AACATTCAAAAGGAATCTAC 2052 >seq20128 Length=1734 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| | || || || || |||||| | ||| |||| | Sbjct 1317 ATGCAGATCTTTGTCAAAACTTTGACTGGCAAGACGATTACCCTTGAAGTGGAGAGCTCT 1376 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || | | | | || || || || ||| ||||| || ||| ||||| ||| ||| Sbjct 1377 GATAGCATCGAGAATGTGAAGCAGAAGATTCAAGATAAGGAGGGCATCCCCCCTGACCAG 1436 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| |||||||| | || |||| | ||| | ||||| || ||| Sbjct 1437 CAGCGTCTCATCTTTGCAGGCAAACAGCTTGAGGATGGCCGCACCCTCGCCGACTACAAC 1496 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||| | || | ||| || | || ||||||| Sbjct 1497 ATTCAAAAGGAATCTACCCTTCACCTCGTGCTGCGCCTGAGAGGAGG 1543 >seq30220 Length=1492 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| | || || || ||||| ||| |||| ||| | Sbjct 1332 ATGCAGATCTTTGTCAAAACTTTGACTGGCAAGACCATCACCCTCGAGGTTGAGAGCTCG 1273 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||| ||| | ||||| || || || || || || ||| |||| || || Sbjct 1272 GACAGCATTGAGAATGTAAAGCAGAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAA 1213 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| ||||| || | ||||||| ||| ||||||| || ||| Sbjct 1212 CAACGTTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGCACCTTGGCCGACTACAAC 1153 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 || || || || |||||| | ||| ||||| | |||||||| || ||| Sbjct 1152 ATCCAGAAGGAATCTACTCTCCATCTGGTGCTTAGATTGCGGGGTGGA 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425045439615280