Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5862 233 2e-56 seq24165 217 2e-51 seq24166 190 3e-43 seq663 187 3e-42 seq310 172 7e-38 seq35896 147 3e-30 >seq5862 Length=2677 Score = 233 bits (258), Expect = 2e-56 Identities = 414/600 (69%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||||| || || ||||| ||||| || || ||||| ||| || ||| Sbjct 1881 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 1822 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||||||||| | ||| ||||||||||| ||||| || | | | || || ||||| Sbjct 1821 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGAA 1763 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 32836 || || || || || || || || | | |||||| | | | | |||| | | Sbjct 1762 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 1703 Query 32837 T---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | ||||| | | ||||| || || ||||| || || |||||| || || || || Sbjct 1702 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 1643 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||| ||||| | || || | || || || || || || ||||| || ||| Sbjct 1642 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 1583 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||||||||| |||||||| |||||||| || ||||| ||||||||||| | |||||| | Sbjct 1582 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1523 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 |||||| || || || || || | || || || ||| |||| || || ||| || Sbjct 1522 AATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGC 1463 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33133 ||||| || ||||||||| |||||||| | ||| || |||| || || ||||| Sbjct 1462 AGCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCA 1403 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || |||| ||| || | || || || || |||||||||| || ||||| ||||| Sbjct 1402 ATGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTT 1343 Query 33194 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 ||| ||||| | ||| | | || | | || ||||| | ||||| | |||||||| Sbjct 1342 TTTGTACATCTCCCAAACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGATT 1283 >seq24165 Length=2677 Score = 217 bits (240), Expect = 2e-51 Identities = 413/602 (69%), Gaps = 12/602 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||||| || || ||||| ||||| || || || || ||| || ||| Sbjct 2315 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGG 2256 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAA 32779 || ||||| ||||| | ||| || |||||||| ||||| || | | ||| || ||||| Sbjct 2255 CCTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTCCCCGAGAAGAA 2197 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 32836 || || || || || || || || | | |||||| | | | |||| | | Sbjct 2196 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTT 2137 Query 32837 T---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | ||||| || | ||||| || || ||||| || ||| |||||| || || || || Sbjct 2136 TTCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGC 2077 Query 32894 ATTAAAGAGATAGtttttttCATTACTA--TCTTTAACATATGTATCAATCAAAAGACTA 32951 ||| ||||| | || || | || || || || || || || ||||| || | Sbjct 2076 ATTGAAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAA 2019 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 ||||||||||| |||||||| |||||||| || ||||| ||||||||||| | |||||| Sbjct 2018 TACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCA 1959 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | ||||| || || || || || | || || || ||| |||| || || ||| Sbjct 1958 GGGATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGAT 1899 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33131 || ||||| || ||||||||| ||||||||| | ||| || |||| || || ||| Sbjct 1898 GCAGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTC 1839 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 |||| ||| ||| || | || || || || |||||||||| || ||||| ||| Sbjct 1838 CAATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCC 1779 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 33251 ||||| ||||| | ||| | | || | | || ||||| | ||||| | |||||| Sbjct 1778 TTTTTGTACATCTCCCAAACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGA 1719 Query 33252 TT 33253 || Sbjct 1718 TT 1717 >seq24166 Length=499 Score = 190 bits (210), Expect = 3e-43 Identities = 342/494 (69%), Gaps = 12/494 (2%) Strand=Plus/Minus Query 32724 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGAAAAT 32782 ||||| ||||| | ||| || |||||||| ||||| || | | ||| || ||||| || Sbjct 497 GGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAA-CAGAAGCTCCCCGAGAAGAAGAT 439 Query 32783 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT-- 32837 || || || || || || || | | |||||| | | | |||| | | | Sbjct 438 ACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTC 379 Query 32838 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| || | ||||| || || ||||| || ||| |||||| || || || ||||| Sbjct 378 AATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATT 319 Query 32897 AAAGAGATAGtttttttCATTACTA--TCTTTAACATATGTATCAATCAAAAGACTATAC 32954 ||||| | || || | || || || || || || || ||||| || |||| Sbjct 318 GAAGAGGCGATCCTTCTC--TGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATAC 261 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTA 33014 |||||||| |||||||| |||||||| || ||||| ||||||||||| | |||||| | Sbjct 260 ATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGG 201 Query 33015 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 ||||| || || || || || | || || || ||| |||| || || ||| || Sbjct 200 ATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCA 141 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33134 ||||| || ||||||||| ||||||||| | ||| || |||| || || |||||| Sbjct 140 GCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAA 81 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 | ||| ||| || | || || || || |||||||||| || ||||| |||||| Sbjct 80 TGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTT 21 Query 33195 TTATACATATTCCA 33208 || ||||| | ||| Sbjct 20 TTGTACATCTCCCA 7 >seq663 Length=3190 Score = 187 bits (206), Expect = 3e-42 Identities = 435/644 (68%), Gaps = 18/644 (3%) Strand=Plus/Minus Query 63032 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63091 |||| || || | || ||||| ||||| | ||| ||||| | |||||| ||||| Sbjct 2005 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATAGATCG 1946 Query 63092 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 63150 || | ||| ||||| ||| || |||||||||| || || || || || || ||||| Sbjct 1945 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1887 Query 63151 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63210 ||| || || |||||| | | || || | ||||| || |||| || || || | | Sbjct 1886 TTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1827 Query 63211 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63270 ||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1826 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1767 Query 63271 CATTGGAATAATACCATTGGATGTACCATTGGT--CCCTGAGATA-TAGCTTCCACTGGC 63327 ||||||||| | ||| |||||||| || || || |||||| || || | || || Sbjct 1766 CATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GC 1710 Query 63328 ACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 |||||| | | | | || ||||||||||| || || | || || || || || || Sbjct 1709 ACGAATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACAC 1652 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 |||| | || ||||| || || ||||| || || || |||||||| ||||| || Sbjct 1651 TGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCAC 1592 Query 63446 CTAGACA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 ||| | | |||| | | || || ||||| || | || |||| || ||||| | Sbjct 1591 GAAGAAAGCTGTGGTCTTGGC--GTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGA 1534 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT-ATATCCCATTGATGA 63562 || || || || | ||||| || ||||| | | | ||| || || || ||| Sbjct 1533 ACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACAG-CTCTGATGTCAGTTTTATGC 1475 Query 63563 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63622 | ||| || || || ||||| |||||||| || |||||||| || ||||| ||| | | Sbjct 1474 AGTCCCACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCACAATCTTTCCGTTCAAT 1415 Query 63623 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63666 || || | || || ||||| || || || |||||||| || Sbjct 1414 TTGAAGAGATAAGAGCGCTCCAATGTCTTGAATCCAAAATAATT 1371 >seq310 Length=11085 Score = 172 bits (190), Expect = 7e-38 Identities = 442/663 (67%), Gaps = 14/663 (2%) Strand=Plus/Plus Query 63032 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63091 |||| || || | || ||||| ||||| | ||| ||||| | ||| || ||||| Sbjct 1367 TCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACAGATCG 1426 Query 63092 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 63150 || | ||| ||||| ||| || |||||||||| || || || || || || ||||| Sbjct 1427 GGTACCCACAGAGC-ATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTT 1485 Query 63151 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63210 ||| || || | ||| | | || || | ||||| || |||| || || || | | Sbjct 1486 TTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGC 1545 Query 63211 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63270 ||| | ||| || || ||||||| ||| | || |||| || || |||| ||| Sbjct 1546 TCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAA 1605 Query 63271 CATTGGAATAATACCATTGGATGTACCATTGGT--CCCTGAGATA-TAGCTTCCACTGGC 63327 ||||||||| | ||| ||||| || || || || |||||| || || | || || Sbjct 1606 CATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGAGTTAGCA---GC 1662 Query 63328 ACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 |||||| | | | | || ||||||||||| || || | || || || || || || Sbjct 1663 ACGAATTTTGTGCACACTG--AGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACAC 1720 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 |||| | || ||||| || || ||||| || || || |||||||| ||||| || Sbjct 1721 TGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCAC 1780 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||| | || | | || || ||||| || | || |||| || ||||| ||| Sbjct 1781 GAAGAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAAC 1840 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT-ATATCCCATTGATGAAT 63564 || || || | ||||| || ||||| | | | ||| || || || ||| | Sbjct 1841 AGTTGTTGGGAGATCAGATTATATGTCTCCAACACCG-CTCTGATGTCAGTTTTATGCAG 1899 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 |||||| || || ||||| |||||||| || || ||||| || |||||| ||| | ||| Sbjct 1900 TCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTTTCCACAATCTTGCCGTTCAATTT 1959 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 || | || || ||||| || || || |||||||| || | ||||||| ||| Sbjct 1960 GAAGAGATAAGAGCGCTCCAATGTCTTGAAGCCAAAATAATTAAAGAGGAAGTCTCTTTC 2019 Query 63685 GTA 63687 || Sbjct 2020 ATA 2022 >seq35896 Length=749 Score = 147 bits (162), Expect = 3e-30 Identities = 249/357 (70%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||||| || || ||||| ||||| || || ||||| ||| || ||| Sbjct 359 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 300 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||||||||| | ||| ||||||||||| ||||| || | | | || || ||||| Sbjct 299 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGAA 241 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 32836 || || || || || || || || | | |||||| | | | | |||| | | Sbjct 240 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 181 Query 32837 T---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | ||||| | | ||||| || || ||||| || || |||||| || || || || Sbjct 180 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 121 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||| ||||| | || || | || || || || || || ||||| || ||| Sbjct 120 ATTGAAGAGGCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATA 61 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 ||||||||| |||||||| |||||||| || ||||| ||||||||||| | |||||| Sbjct 60 CATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633175832482400