Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq24165 192 7e-44 seq5862 188 8e-43 seq24166 158 1e-33 seq35896 131 2e-25 >seq24165 Length=2677 Score = 192 bits (212), Expect = 7e-44 Identities = 407/604 (67%), Gaps = 5/604 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTA 93149 ||| ||||||||| ||| | || || |||| || | ||||||||||||||||| | Sbjct 2316 GCAGGCAAAGTCGCAATGAAGGCCCTCATCTC-TGCTGATCAACTCATTGCTGAAGCAGA 2258 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 ||||| | || || | |||||||||||||| || ||| || || || || || | Sbjct 2257 GGCCTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGA 2198 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGGAATTAC 93266 | ||||| ||||| || || |||||||| | | || | || || |||| | Sbjct 2197 AGATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCT 2138 Query 93267 TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 | |||||||| | ||||| || ||||| ||||| | | |||| | |||||||| | Sbjct 2137 TTTCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGG 2078 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 | || || ||| ||| ||| | | || | ||| || || || || || |||| Sbjct 2077 CATTGAAGAGGCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAAT 2018 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 ||||||| || || | ||||| || || || || || |||||||| || | ||| || | Sbjct 2017 ACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAG 1958 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 |||||| || || || | | | | || ||| | || || ||||| |||| Sbjct 1957 GGATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATG 1898 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 | ||||| || ||||||| | |||||||| ||||||||||| | | || | || Sbjct 1897 CAGCAAAGAAGGCCAATACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCC 1838 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 ||| | |||| | ||| || || || ||| | |||||||| || || || || | Sbjct 1837 AATGGTTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCT 1778 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGT 93686 |||||||||| ||||| | | ||| | | || ||||| | ||||| || || || | Sbjct 1777 TTTTGTACATCTCCCAAACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGAT 1718 Query 93687 TATC 93690 | || Sbjct 1717 TCTC 1714 >seq5862 Length=2677 Score = 188 bits (208), Expect = 8e-43 Identities = 511/774 (66%), Gaps = 11/774 (1%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || ||||| || ||||| ||| |||| | || |||||||| | || | Sbjct 2049 CTGTCCGCCACAAACTCAATGTATTGACACATGAGCTCGGCGTTCATTCCAATGAGGCCA 1990 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || |||| || | | ||| || ||||| ||| | || || || || | ||||| Sbjct 1989 ACTGGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGG 1930 Query 93044 ATTACTCTACTATTTGGTGGTTTTTGTACGA-CATAATTGTACATTAAGCACGCAAAGTC 93102 | || || | | |||| | |||| ||| | ||| | | ||| |||||||| Sbjct 1929 GTGGGAATATTAGTGGATGGTCGGTTGACGAGCATGCT-GTATAGGAGGCAGGCAAAGTC 1871 Query 93103 GGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 | ||| | || || |||| || | ||||| ||||||||||| | ||||| | | Sbjct 1870 GCAATGAAGGCCCTCATCTC-TGCTGATCAATTCATTGCTGAAGCAGAGGCCTGGCATTA 1812 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | || | ||||| |||||||| || ||| || ||||| || || || ||||| |||| Sbjct 1811 GGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAGATACCCTCCA 1752 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGGAATTACTGCTGATCCATT 93278 | || || |||||||| | | || | ||| || |||| | | |||||| Sbjct 1751 CAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTTTCAATCCATC 1692 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | | ||||| || ||||| ||||| | |||| | |||||||| || || || ||| Sbjct 1691 TGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCATTGAAGAGGC 1632 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 ||| ||| | | || | ||| || || || || || ||||||||||| || | Sbjct 1631 GATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACATTTCCGAGT 1572 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | | ||||| || || || || || |||||||| || | ||| || | ||||| || | Sbjct 1571 GAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGAATCTGAACCT 1512 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 | || | | | | || ||| | || || ||||| || || ||||| || | Sbjct 1511 CGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGCAGCAAAGAAGG 1452 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT--AG 93576 |||||| | ||||||||| ||||||||||| | | || | ||||| ||| | Sbjct 1451 CCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAAT--GATTGTG 1394 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||| | ||| || || || ||| | |||||||| || || || || ||||||||||| Sbjct 1393 ATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTTTTGTACAT 1334 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 ||||| | | ||| | | || ||||| | ||||| || || || || || Sbjct 1333 CTCCCAAACGCGTTGGTGGCGGATGGGAAACAGCACAAAGCGGTTTGGATTCTC 1280 >seq24166 Length=499 Score = 158 bits (174), Expect = 1e-33 Identities = 321/476 (67%), Gaps = 3/476 (1%) Strand=Plus/Minus Query 93170 TTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCA 93229 |||||||||||||| || ||| || || || || || || ||||| ||||| || || Sbjct 482 TTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATACCCTCCACAGCGGCG 423 Query 93230 AATGCCACAATACGTTCGGCAAA---ATTTGCGGAATTACTGCTGATCCATTTTAAAGCC 93286 |||||||| | | || | || || |||| | | |||||||| | ||| Sbjct 422 AATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTTTCAATCCATTTGAGGGCC 363 Query 93287 CAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGC 93346 || || ||||| ||||| | | |||| | |||||||| || || || ||| ||| | Sbjct 362 CATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATTGAAGAGGCGATCCTTC 303 Query 93347 TCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTC 93406 || | | || | ||| || || || || || ||||||||||| || || | ||| Sbjct 302 TCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACATTTCCGAGTGAATGTTC 243 Query 93407 TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA 93466 || || || || || || |||||||| || | ||| || | |||||| || || Sbjct 242 TCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGATCTGAACCTCGGTCATG 183 Query 93467 AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATA 93526 || | | | | || ||| | || || ||||| ||||| ||||| || ||||||| | Sbjct 182 AAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCAGCAAAGAAGGCCAATACA 123 Query 93527 TGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAA 93586 |||||||| ||||||||||| | | || | ||||| | |||| | | Sbjct 122 GATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAATGGTTGTGATCAGAAGCA 63 Query 93587 AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCA 93642 || || || || ||| | |||||||| || || || || ||||||||||| ||||| Sbjct 62 AGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGCCTTTTTGTACATCTCCCA 7 >seq35896 Length=749 Score = 131 bits (144), Expect = 2e-25 Identities = 348/526 (66%), Gaps = 7/526 (1%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || ||||| || ||||| ||| |||| | || |||||||| | || | Sbjct 527 CTGTCCGCCACAAACTCAATGTATTGACACATGAGCTCGGCGTTCATTCCAATGAGGCCA 468 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || |||| || | | ||| || ||||| ||| | || || || || | ||||| Sbjct 467 ACTGGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGG 408 Query 93044 ATTACTCTACTATTTGGTGGTTTTTGTACGA-CATAATTGTACATTAAGCACGCAAAGTC 93102 | || || | | |||| | |||| ||| | ||| | | ||| |||||||| Sbjct 407 GTGGGAATATTAGTGGATGGTCGGTTGACGAGCATGCT-GTATAGGAGGCAGGCAAAGTC 349 Query 93103 GGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 | ||| | || || |||| || | ||||| ||||||||||| | ||||| | | Sbjct 348 GCAATGAAGGCCCTCATCTC-TGCTGATCAATTCATTGCTGAAGCAGAGGCCTGGCATTA 290 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | || | ||||| |||||||| || ||| || ||||| || || || ||||| |||| Sbjct 289 GGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAGATACCCTCCA 230 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGGAATTACTGCTGATCCATT 93278 | || || |||||||| | | || | ||| || |||| | | |||||| Sbjct 229 CAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTTTCAATCCATC 170 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | | ||||| || ||||| ||||| | |||| | |||||||| || || || ||| Sbjct 169 TGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCATTGAAGAGGC 110 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 ||| ||| | | || | ||| || || || || || ||||||||||| || | Sbjct 109 GATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACATTTCCGAGT 50 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 | | ||||| || || || || || |||||||| || | ||| || Sbjct 49 GAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556459901988560