Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq35896 87.8 4e-12 seq31773 87.8 4e-12 seq5862 87.8 4e-12 seq4713 87.8 4e-12 seq2410 87.8 4e-12 seq45112 86.0 1e-11 >seq35896 Length=749 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || |||||||| | |||||||| || || || | ||||| | ||||||||| | | Sbjct 626 TCAAAGAAATTCGTCTTGCCCTGTAGCGAAATCATTTCCATCCAAGGGAAGGGGTTGGCG 567 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| |||||| ||||| || |||| | | ||| ||||||||||| | Sbjct 566 GCATTGTAGACCTTGGGGCATCCAAGAGCGACGAGAAGCCTGTCCGCCACAAACTCAATG 507 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || | ||| || || | |||||| ||||| | | | |||| | ||| | | | Sbjct 506 TATTGACACATGAGCTCGGCGTTCATTCCAATGAGGCCAACTGGAAGAGACTCTGATACG 447 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCT 251770 |||||||| || | | || ||||||| Sbjct 446 AATTCCTTCTCAATTTCCACAGCCTCCT 419 >seq31773 Length=543 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 414 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 471 >seq5862 Length=2677 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || |||||||| | |||||||| || || || | ||||| | ||||||||| | | Sbjct 2148 TCAAAGAAATTCGTCTTGCCCTGTAGCGAAATCATTTCCATCCAAGGGAAGGGGTTGGCG 2089 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| |||||| ||||| || |||| | | ||| ||||||||||| | Sbjct 2088 GCATTGTAGACCTTGGGGCATCCAAGAGCGACGAGAAGCCTGTCCGCCACAAACTCAATG 2029 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || | ||| || || | |||||| ||||| | | | |||| | ||| | | | Sbjct 2028 TATTGACACATGAGCTCGGCGTTCATTCCAATGAGGCCAACTGGAAGAGACTCTGATACG 1969 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCT 251770 |||||||| || | | || ||||||| Sbjct 1968 AATTCCTTCTCAATTTCCACAGCCTCCT 1941 >seq4713 Length=4144 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 394 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 337 >seq2410 Length=5215 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| || ||||||||||||||||||||||| Sbjct 2452 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 2509 >seq45112 Length=923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/59 (93%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATC-TAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| || ||||||| | ||||||||||||||||||||||||| Sbjct 758 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTAGTGGTCGTGGGTTCGAGCCCCAC 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027078335456554