Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq49354 107 1e-18 seq9092 96.9 2e-15 seq50001 89.7 4e-13 seq29893 86.0 4e-12 seq20128 82.4 5e-11 >seq49354 Length=412 Score = 107 bits (118), Expect = 1e-18 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 21835 TGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCAG 21894 |||| || || | || || | || ||||| || |||||| | ||| |||| || ||| Sbjct 412 TGCAGATTTTCGTGAAGACGCTCACTGGCAAGACGATTACCCTCGAAGTGGAATCCTCAG 353 Query 21895 AAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAACC 21951 | || | | || | |||||||| ||| || || ||||| | ||||| | | Sbjct 352 ACTCGATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCTG---ATC 296 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 |||| | || |||||||| |||||||| || ||||| || ||||||| |||| Sbjct 295 AACAACGTCTGATCTTTGCAGGCAAACAGCTTGAAGACGGCCGTACCTTGGCCGACTACA 236 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | ||||||||||| |||||||||||| |||| | ||||| ||||||| Sbjct 235 ACATTCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTTTGAGAGGAGG 187 >seq9092 Length=1269 Score = 96.9 bits (106), Expect = 2e-15 Identities = 174/252 (69%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || | || ||||| || |||||| | ||| |||| || || Sbjct 45 ATGCAGATTTTCGTGAAGACGCTCACTGGCAAGACGATTACCCTCGAAGTGGAATCCTCA 104 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | |||||||| ||| || || ||||| | || |||| Sbjct 105 GACTCGATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 164 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | |||||||| |||||||| || || ||| || ||||||| ||||| Sbjct 165 CAGCGCTTGATCTTTGCAGGCAAACAGCTCGAGGATGGCCGCACGTTGGCCGACTACAAC 224 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 || ||||||||||||||||| ||| |||| | | || || || ||| | || ||||| Sbjct 225 ATCCAGAAGGAATCTACTCTCCATCTGGTGCTTAGATTGCGTGGTGGACAGTA--AATAA 282 Query 22074 AAACCATAAATA 22085 | | ||||||| Sbjct 283 ATA-AATAAATA 293 >seq50001 Length=390 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||||| || ||||| ||||| ||| | ||| ||| | | Sbjct 89 ATGCAGATCTTTGTGAAGACATTGACCGGCAAGACCATCACCCTCGAAGTGGAGTCATCT 148 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||||| || ||| || || ||||| | ||| | || Sbjct 149 GATTCGATTGAGAATGTAAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 208 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | |||||||| ||||| || || || ||| | ||| |||| || ||||| Sbjct 209 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACTCTGGCTGACTACAAC 268 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||||||||| ||||| |||| Sbjct 269 ATTCAGAAGGAATCTACCCTTCACTTGGT 297 >seq29893 Length=915 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || ||||| ||||||||| | || |||| || | Sbjct 652 ATGCAGATCTTTGTAAAGACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAATCCTCT 711 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || | ||||| || ||| || || ||||| | || |||| Sbjct 712 GACAGCATCGAGAATGTGAAGCAGAAGATTCAAGACAAGGAGGGCATTCCCCCTGACCAG 771 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || |||||||| |||||||| || || ||| || |||| || ||||| Sbjct 772 CAGCGCCTCATCTTTGCAGGCAAACAGCTCGAGGATGGCCGCACACTGGCTGACTACAAC 831 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||||||||| || || |||| | ||||| | ||||| Sbjct 832 ATCCAGAAGGAATCTACCCTCCACTTGGTGCTTCGTTTGAGGGGAGG 878 >seq20128 Length=1734 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| || || ||||| || |||||| | ||| ||| | | Sbjct 1317 ATGCAGATCTTTGTCAAAACTTTGACTGGCAAGACGATTACCCTTGAAGTGGAGAGCTCT 1376 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || | ||||| || ||| ||||| ||||| | || |||| Sbjct 1377 GATAGCATCGAGAATGTGAAGCAGAAGATTCAAGATAAGGAGGGCATCCCCCCTGACCAG 1436 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || |||||||| |||||||| || || ||| || | ||||| ||||| Sbjct 1437 CAGCGTCTCATCTTTGCAGGCAAACAGCTTGAGGATGGCCGCACCCTCGCCGACTACAAC 1496 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 ||||| ||||||||||| ||||| Sbjct 1497 ATTCAAAAGGAATCTACCCTTCA 1519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357873422578276