Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq310 183 3e-41 seq663 178 1e-39 >seq310 Length=11085 Score = 183 bits (202), Expect = 3e-41 Identities = 620/951 (65%), Gaps = 25/951 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT- 93950 ||||| || || || ||||| || || || || ||||||| | |||||||| || || Sbjct 1830 GCCACTCCCACACTTTTCAATGCTGGCACGCCAAGGCCACAGCTTTCTTCGTGCTTTCTC 1771 Query 93951 GATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | | || |||| ||| ||| || || | |||| || || | ||||| Sbjct 1770 GTTAACATGCAAGAA-GACAGCATAGAAGGGATATATGACACACTTAAACAGTGTGCTTT 1712 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 || || || || || ||||| || ||||||| ||| | | ||||| || Sbjct 1711 GATTTCCAAGAGTGCCGGAGGAATAGGTCTCAGTGTGCACAAAATTCGTGCTGCTAACTC 1652 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 |||||| | || || || ||||| |||||||| || | || ||| | || || | ||| Sbjct 1651 GTACATCAGGGGCACGAACGGCACGTCCAACGGTCTAATTCCAATGTTGCGAGTGTACAA 1592 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 | || | || |||||||| || || |||||||| | ||| ||||| | || || |||| Sbjct 1591 CGACACAGCACGCTACGTAGATCAAGGTGGTGGCAAGAGAAAGGGAGCATTTGCAATCTA 1532 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 ||| ||||| |||||||||||| | | || | || ||| ||||||||||||||| Sbjct 1531 TCTGGAGCCTTGGCACGCGGACATCTTTGAGTTTTTGGAGCTGAAAAAGAACCACGGCAA 1472 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || | || | |||||||| |||||||| ||||| ||||| || || || || ||| | Sbjct 1471 GGAAGAGCAGCGAGCCAGAGATCTCTTCTATGCTCTGTGGGTACCCGATCTGTTCATGGA 1412 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 | || ||| | |||| || ||||| |||||||| || || || Sbjct 1411 GAGAGTGGAGGCCGGAGGAGACTGGTCACTGTTTTGCCCCAATGAGGCACCAGGTCTTCA 1352 Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGG 94429 ||| || ||| | ||||| || |||| | || || | | ||| ||||| || Sbjct 1351 AGACAAGTGGGGAGCTGAATTTGAGGAGCTGTACACACGCTATG-AGCGCGAGGGCCGGG 1293 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | ||| | | | | || |||| ||| | ||| |||| | || | |||| Sbjct 1292 CAAGGCGTGCTGTCAAGGCCCAAGAGCTTTGGTTTGCTATCTTGGAGGCCCAAATAGAGA 1233 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 | ||||| || || || | | |||||| | ||| |||||| || |||||||| |||||| Sbjct 1232 CTGGTACTCCTTATATGCTCTACAAGGACCACTG-CAACGCGAAATCCAACCATCAGCAC 1174 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| || | | || || || || || || |||||| ||| || || || | Sbjct 1173 CTCGGCACCATTCAATGTTCCAACCTTTGTACTGAAATTGTCCAGTTCACATCACCCAAA 1114 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 || | || |||||||| || | || || || ||| || ||| || | | | Sbjct 1113 GAAGTGGCCGTGTGTAATCTTGCTTCAATGGCTTTGCCCAAATTTGTG-GACAAGGAGA- 1056 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGTCTT 94727 | || | ||| |||| ||| |||| | ||| | || | | ||||| Sbjct 1055 -----AAATGAT--GTTTGATCATGAGAAGCTCTTTGA----GGTGGTCAAGGTGGTCAC 1007 Query 94728 G---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784 | ||| |||||| ||| || ||| |||| |||||| || || || || ||| |||| Sbjct 1006 GCGCAACTTGAACAAGGTGATAGACGTCAACTACTACCCAGTTCCAGAAGCCGAGCACTC 947 Query 94785 AAACCTGAAG-CATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACG 94834 || | || | || ||||||| ||| | ||||| ||||| | || |||| Sbjct 946 CAA-CAGACGCCACAGGCCCATTGGCCTTGGCGTACAGGGCCTAGCTGACG 897 >seq663 Length=3190 Score = 178 bits (196), Expect = 1e-39 Identities = 488/740 (66%), Gaps = 6/740 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCT- 93950 ||||| || || || ||||| || || || || |||||| | |||||||| || || Sbjct 1542 GCCACTCCCACACTTTTCAATGCTGGCACGCCAAGACCACAGCTTTCTTCGTGCTTTCTC 1601 Query 93951 GATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | | || |||| ||| ||| || || | |||| || || | ||||| Sbjct 1602 GTTAACATGCAAGAA-GACAGCATAGAAGGGATATATGACACACTTAAACAGTGTGCTTT 1660 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 || || || || || ||||| || ||||||| ||| | | ||||| || Sbjct 1661 GATTTCCAAGAGTGCCGGAGGAATAGGTCTCAGTGTGCACAAAATTCGTGCTGCTAACTC 1720 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 |||||| | || || || || || |||||||| || | || ||| | || || | ||| Sbjct 1721 GTACATCAGGGGCACGAACGGAACATCCAACGGTCTAATTCCAATGTTGCGAGTGTACAA 1780 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 | || | || |||||||| || || |||||||| | ||| ||||| | || || |||| Sbjct 1781 CGACACAGCACGCTACGTAGATCAAGGTGGTGGCAAGAGAAAGGGAGCATTTGCAATCTA 1840 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 ||| ||||| |||||||||||| | | ||| | || ||| ||||||||||||||| Sbjct 1841 TCTGGAGCCTTGGCACGCGGACATCTTTGAGTTCCTGGAGCTGAAAAAGAACCACGGCAA 1900 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || | || | |||||||| |||||||| ||||| ||||| || || || |||||| | Sbjct 1901 GGAAGAGCAGCGAGCCAGAGATCTCTTCTATGCTCTGTGGGTACCCGATCTATTTATGGA 1960 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 | || ||| | |||| || ||||| |||||||| || || || Sbjct 1961 GAGAGTGGAGGCCGGAGGAGACTGGTCACTGTTTTGCCCCAATGAGGCACCAGGTCTTCA 2020 Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGG 94429 ||| || ||| | ||||| || |||| | || || | | ||| ||||| || Sbjct 2021 AGACAAGTGGGGAGCTGAATTTGAGGAGCTGTACACACGCTATG-AGCGCGAGGGCCGGG 2079 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | ||| | | | | || |||| ||| | ||| |||| | || | |||| Sbjct 2080 CAAGGCGTGCTGTCAAGGCCCAAGAGCTTTGGTTTGCTATCTTGGAGGCTCAAATAGAGA 2139 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 | ||||| || || || | | ||| || | ||| |||||| || |||||||| |||||| Sbjct 2140 CTGGTACTCCTTATATGCTCTACAAAGACCACTG-CAACGCGAAATCCAACCATCAGCAC 2198 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| || | | || || || || ||||| |||||| ||| || || || | Sbjct 2199 CTCGGCACCATTCAATGTTCCAACCTTTGTACCGAAATTGTCCAGTTCACATCACCCAAA 2258 Query 94609 GAGATTGCTGTGTGTAACCT 94628 || | || || ||||| || Sbjct 2259 GAAGTGGCCGTATGTAATCT 2278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494367036400240