Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq49259 104 2e-17 seq48723 96.9 2e-15 seq17585 95.1 9e-15 seq43562 93.3 3e-14 seq25074 86.0 4e-12 >seq49259 Length=868 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||||||| |||||||| || ||||| |||||||||||| | | | | || || Sbjct 263 ACTAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCATCCTCA 322 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || |||||| | |||| |||||| ||||| ||||| || ||||| || | Sbjct 323 AGTTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCTTGA 382 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || |||| |||| || ||| || || | ||||||||| || Sbjct 383 ATCTTCTGCTTGACGTTTTCAATAGAGTCAGAGGATTCCACCTCGAGGGTAATGGTCTTT 442 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| |||||||||||| || |||||| Sbjct 443 CCAGTCAAAGTTTTTACAAAGATCTGCATA 472 >seq48723 Length=522 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||| ||| | || |||||||| || || || ||||| |||||||| || Sbjct 284 CCTCCACGCAGTCTGAGCACCAAATGAAGAGTGGATTCCTTTTGGATGTTGTAGTCTGCA 343 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | || ||||||||| | || | |||||||| || ||| Sbjct 344 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGTTGATCAGGGGGA 403 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || ||| || || || |||| |||| || ||| || Sbjct 404 ATGCCCTCCTTATCTTGAATCTTCTGCTTGACGTTTTCAATAGAGTCAGAGGATTCCACC 463 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||||||| || || |||| |||||||||||| || |||||| Sbjct 464 TCGAGGGTAATGGTCTTTCCAGTCAAAGTTTTTACAAAGATCTGCATA 511 >seq17585 Length=2016 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG-AGAATTCTCGCGTCTT 15025 ||| || || |||||||| || ||| | |||||||| ||| | ||| | | |||| | Sbjct 1624 AACCAAGTGGAGGGTAGATTCCTTTGG-ATGTTGTAGTCGACGCAGAGTGCGGCCGTCCT 1682 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | || ||||| || | ||||||||||| || ||| ||||| || |||||||| Sbjct 1683 CAAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCT 1742 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || || |||||| | || || |||| || || || | ||||||||| | Sbjct 1743 GGATCTTCTGCTTTACATTCTCGATGCTATCAGAGGACTCGACCTCAAGGGTAATGGTCT 1802 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||||| |||||||||||| || ||||| Sbjct 1803 TTCCTGTCAAAGTTTTTACAAAGATCTGCAT 1833 >seq43562 Length=381 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || || || |||||||| ||| | | | |||| || Sbjct 143 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCG 202 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | ||||||||||| || ||| ||||| || |||||||| Sbjct 203 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGG 262 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || |||||| | || || |||| || || || | ||||||||| || Sbjct 263 ATCTTCTGCTTTACATTCTCGATGCTATCAGAGGACTCGACCTCAAGGGTAATGGTCTTT 322 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| |||||||||||| || ||||| Sbjct 323 CCTGTCAAAGTTTTTACAAAGATCTGCAT 351 >seq25074 Length=2226 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || || || ||||| || || ||||| |||||||| || Sbjct 213 TGCCACCTCTCAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTG 272 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | |||| || | || ||||||||| | |||| ||||||||| || || Sbjct 273 CAAGGGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCAGGTG 332 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||| || || || |||| |||| || ||| | Sbjct 333 GGATGCCTTCCTTGTCCTGAATCTTATGCTTGACGTTTTCAATAGAGTCTGAGGATTCCA 392 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | |||| ||| || || |||| ||| || || || |||||||| || Sbjct 393 CCTCAAGAGTAACGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCATGTT 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357141136950290