Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq310 176 6e-39 seq663 158 1e-33 seq24165 100 3e-16 >seq310 Length=11085 Score = 176 bits (194), Expect = 6e-39 Identities = 874/1364 (64%), Gaps = 31/1364 (2%) Strand=Plus/Plus Query 115875 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 ||| || || || | | |||| || ||||| |||| |||||| |||||||||||||| Sbjct 526 AAAGTCTCCGGCCAAGATGCGCCTTGTGTAGATATTGGACGTGTAGGGCTCAAAGCACTC 585 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||| |||| || |||| || || || || ||||| || || | || | ||| || Sbjct 586 ATTGTTTCCCAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGCGCGACAAGTAAGCTATT 645 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 116054 || ||||| | || ||||| | ||||||||| |||| || | | || Sbjct 646 TCGCAGACCGTGCTCCACAATGCTTGCCTTGAGGGACGCCCAATCCCAACGGGAGGATGG 705 Query 116055 CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 ||| | | |||||| |||||||| || | ||||| | || || || || ||||||| Sbjct 706 CTCGACATTCCACATGTCAAACTGAAGTAGACCTTTGCTCGTGGGAGAGCCGGCAAATGT 765 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGG-AGCTCGCCTCGAGGGCTGCGTGATACA 116173 || || || | ||| |||| || || | | |||||| || || | Sbjct 766 GGGGTAGGGCCCTTGCTCCTTTGCCAGCTCATTAGATGATGT-GAGGGCGGCAAAGTAGA 824 Query 116174 TTGTCTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 |||||||||||||| || | || | || ||||| ||| || | | | || Sbjct 825 TTGTCTCAAAAATGTCGCGG-TTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCATGCGC 883 Query 116233 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | | || || || || || || || || || || |||||||| || | || | | Sbjct 884 AAGAGAAGGAAGACGTCAGCTAGGCCCTGTACGCCAAGGCCAATGGGCCTGTGGCGTCTG 943 Query 116293 TTAGACTT-TCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 116350 || || | ||| || ||| | | || || | || || || ||| | || | | Sbjct 944 TTGGAGTGCTCG-GCT-TCTGGAACTGGGTAGTAGTTGACGTCTATCACCTTGTTCAAGT 1001 Query 116351 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 116410 | ||||| ||||| | ||| ||||| || | |||||| | |||| | Sbjct 1002 TGCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCATGATCAAACATCATTTTCTCCT 1061 Query 116411 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA- 116469 | ||| | || || | || ||||| || ||||||||||| || | | || || Sbjct 1062 TGTCCACAAATTTGGGCAAAGCCATTGAAGCAAGATTACACAC---GGCCACTTCTTTGG 1118 Query 116470 -TCA-GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 | | ||| ||| | |||||| ||||| | || |||| | ||||||||| | || || Sbjct 1119 GTGATGTGAACTGGACAATTTCAGTACAAAGGTTGGAACATTGAATGGTGCCGAGGTGCT 1178 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 || || || || | ||| || ||||||||||||||||| || || || ||||| Sbjct 1179 GATGGTTGGATTTCGCGTTGCAGTGGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCTA 1238 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAG-TGGCGTTGGCTCGC 116646 |||||| || | ||||| ||| | || ||| |||| || || || || Sbjct 1239 TTTGGGCCTCCAAGATAGCAAACCAAAGCTCTTGGGCCTTGACAGCACGCCTT-GCCCGG 1297 Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTC-ACCCAC-AGCCTCTGAGA 116704 ||||| ||| || |||||| || ||||||| || | ||||| | || ||| | Sbjct 1298 CCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCT-TGA-A 1355 Query 116705 GCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764 | |||||||||| || || || || || ||||| | || || |||| || | || || Sbjct 1356 GACCTGGTGCCTCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCA 1415 Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATC 116822 |||| || || || | ||| || || |||||||||| | || ||| ||||| | Sbjct 1416 TGAACAGATCGGGTACCCACAGAGCATAGAAGAGATCTC--TGGCTCGCTGCTCTTCCTT 1473 Query 116823 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882 || || || || ||||||||| || | ||| ||||||||||| || ||||| || Sbjct 1474 GCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATA 1533 Query 116883 CACCGCGATTGACCCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTT 116939 | || | || ||||| | | |||| | || | ||| || | || || |||| Sbjct 1534 GATTGCAAATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTT 1593 Query 116940 AAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGA 116997 | || || | ||||||||| | ||| | || ||| || || |||| || ||||| Sbjct 1594 GTACACTCGCAACATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGA 1653 Query 116998 GACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 117057 | || || | | | ||| | | ||| || || || || | ||| || || Sbjct 1654 G--TTAGCAGCACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATC 1711 Query 117058 TGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 117117 || |||| | || || | || ||||| || || ||| | | | | | Sbjct 1712 AAAGCACACTGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACG 1771 Query 117118 AGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCG 117177 || ||||| || | ||||||||||| || ||||| ||||| || || || || || Sbjct 1772 AGAAAGCACGAAGAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCA 1831 Query 117178 TGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGAC 117221 || |||||| |||||| ||| || || |||||||| || Sbjct 1832 TGAGTGAACAGTTGTTGGGAGATCAGATTATATGTCTCCAACAC 1875 >seq663 Length=3190 Score = 158 bits (174), Expect = 1e-33 Identities = 909/1429 (64%), Gaps = 31/1429 (2%) Strand=Plus/Minus Query 115875 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 ||| || || || | | |||| || |||||||||| ||||| |||||||||||||| Sbjct 2846 AAAGTCTCCGGCCAAGATGCGCCTTGTGTAGATGTTGGAAGTGTAGGGCTCAAAGCACTC 2787 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||| |||| || |||| || || || || ||||| ||||| | || | ||| || Sbjct 2786 ATTGTTTCCCAGTATCTGGGAAGTAGAAGCCGTCGGCATAGGTGCGACAAGTAAGCTATT 2727 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 116054 || || || | || ||||| | ||||||||| |||| || | | || Sbjct 2726 TCGCAGGCCGTGCTCCACAATGCTTGCCTTGAGGGACGCCCAATCCCAACGGGAGGATGG 2667 Query 116055 CTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 116114 ||| | | ||||||||||||||| || | ||||| | || || || || ||||||| Sbjct 2666 CTCAACATTCCACATATCAAACTGAAGAAGACCTTTGCTCGAGGGAGAGCCGGCAAATGT 2607 Query 116115 CTCATATGGGCCCTCAACCTCCGCCAATTCGG-AGCTCGCCTCGAGGGCTGCGTGATACA 116173 || || || | ||| |||| || || | | |||||| || || | Sbjct 2606 GGGGTAGGGCCCTTGCTCCTTTGCCAGCTCATTAGATGATGT-GAGGGCGGCAAAGTAGA 2548 Query 116174 TTGTCTCAAAAATG-CGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 |||||||||||||| || | || | || ||||| || ||| | | | || Sbjct 2547 TTGTCTCAAAAATGTCGCGG-TTGAGGGCGCGTGCCTCTTCACTATCCCAAGGCATGCGC 2489 Query 116233 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 | | || || || || || || || || || || || ||||| || | || | | Sbjct 2488 AAGAGAAGGAAGACGTCAGCTAGGCCCTGTACGCCAAGACCAATGGGCCTGTGACGTCTG 2429 Query 116293 TTAGACTT-TCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 116350 || || | ||| || ||| | | || || | || || || ||| | || | | Sbjct 2428 TTGGAGTGCTCG-GCT-TCTGGAACTGGGTAGTAGTTGACGTCTATCACCTTGTTCAAGT 2371 Query 116351 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 116410 | ||||| ||||| | ||| ||||| || | |||||| | |||| | Sbjct 2370 TGCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCATGATCAAACATCATTTTCTCCT 2311 Query 116411 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA- 116469 | ||| | ||||| | || ||||| || |||||||| || || | | || || Sbjct 2310 TGTCCACAAATTTAGGCAAAGCCATTGAAGCAAGATTACATAC---GGCCACTTCTTTGG 2254 Query 116470 -TCA-GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 | | ||| ||| | |||||| ||||| | || |||| | ||||||||| | || || Sbjct 2253 GTGATGTGAACTGGACAATTTCGGTACAAAGGTTGGAACATTGAATGGTGCCGAGGTGCT 2194 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 || || || || | ||| || || |||||||||||||| || || || ||||| Sbjct 2193 GATGGTTGGATTTCGCGTTGCAGTGGTCTTTGTAGAGCATATAAGGAGTACCAGTCTCTA 2134 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAG-TGGCGTTGGCTCGC 116646 |||| | || | ||||| ||| | || ||| |||| || || || || Sbjct 2133 TTTGAGCCTCCAAGATAGCAAACCAAAGCTCTTGGGCCTTGACAGCACGCCTT-GCCCGG 2075 Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTC-ACCCAC-AGCCTCTGAGA 116704 ||||| ||| || |||||| || ||||||| || | ||||| | || ||| | Sbjct 2074 CCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCT-TGA-A 2017 Query 116705 GCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764 | |||||||||| || || || || || ||||| | || || |||| || | || || Sbjct 2016 GACCTGGTGCCTCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCA 1957 Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATC 116822 | || || || || | ||| || || |||||||||| | || ||| ||||| | Sbjct 1956 TAAATAGATCGGGTACCCACAGAGCATAGAAGAGATCTC--TGGCTCGCTGCTCTTCCTT 1899 Query 116823 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882 || || || || ||||| || || | ||| ||||||||||| || ||||| || Sbjct 1898 GCCGTGGTTCTTTTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATA 1839 Query 116883 CACCGCGATTGACCCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTT 116939 | || | || ||||| | | |||| | || | ||| || | || || |||| Sbjct 1838 GATTGCAAATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTT 1779 Query 116940 AAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGA 116997 | || || | ||||||||| | ||| | ||| || || || |||| || ||||| Sbjct 1778 GTACACTCGCAACATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGA 1719 Query 116998 GACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 117057 | || || | | | ||| | | ||| || || || || | ||| || || Sbjct 1718 G--TTAGCAGCACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATC 1661 Query 117058 TGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 117117 || |||| | || || | || ||||| || || ||| | | | | | Sbjct 1660 AAAGCACACTGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACG 1601 Query 117118 AGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCG 117177 || ||||| || | ||||| ||||| || ||||| ||||| || || || || || Sbjct 1600 AGAAAGCACGAAGAAAGCTGTGGTCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCA 1541 Query 117178 TGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCC 117237 || |||||| |||||| ||| || || |||||||| |||| ||||| Sbjct 1540 TGAGTGAACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACAGCTCTGATGTCAGTT 1481 Query 117238 CCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 117286 || | || | | || ||||| ||||||| ||||||| |||||| Sbjct 1480 TTATGCAGTCCCACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCA 1432 >seq24165 Length=2677 Score = 100 bits (110), Expect = 3e-16 Identities = 440/688 (64%), Gaps = 25/688 (4%) Strand=Plus/Minus Query 127362 ACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGT 127421 |||||||||| | |||| ||| | |||||| || |||||| | ||| || | | Sbjct 2470 ACTCAATGTATTGGCACATGAGCTCGGCGTTCATTCCAATGAGGCCAACTGGAAGAGACT 2411 Query 127422 CCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT---GGCGTGAATAGT-G 127477 | | | ||| |||||||||| |||||||| ||| | ||| || | ||||| | | Sbjct 2410 CTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGGGTGGGAATATTCG 2351 Query 127478 TCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCTTGGTGGAGA 127537 | || |||| ||| | | || |||| ||||| || || || Sbjct 2350 TGGAC----GGTCGGTTGACGAGCATGCTGTAGAGGAGGCAGGCAAAGTCGCAATGAAGG 2295 Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| || | | ||| | ||||| |||||| || ||||||||||| |||| |||| Sbjct 2294 CCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCTGGCATGAGGCCCCTCTTC 2235 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||| || || | ||| || || ||||||||||| ||||||||| ||||| Sbjct 2234 TTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATACCCTCCACAGCGGCGAAT 2175 Query 127658 GCAAATAGACGCTC-GGCAAAG-----GAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || | || | ||| || || | | || | |||| |||| ||| || | ||| Sbjct 2174 GCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTT---TCAATCCATTTGAGGGCC 2118 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 127771 || | || || |||| || | | || || || | ||| || | ||||| | ||| Sbjct 2117 CATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATTGAAGAGGCGATCCTTC 2058 Query 127772 TCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATT 127831 |||| ||| || || | ||| | ||||| | ||||| |||| ||| | | Sbjct 2057 TCTGCTGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACATTTCCGAGTGAATGTTC 1998 Query 127832 TCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGG 127889 ||| ||||| |||| | ||||||| |||| || || ||||| ||||| | Sbjct 1997 TCA--ATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGGATCTGAACCTC--GGT 1942 Query 127890 CA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAG 127947 || || | | |||||| ||||| ||||| || ||||||| || |||| Sbjct 1941 CATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGATGCAGCAAAGAAGGCCAA 1882 Query 127948 GATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGATCCTT 128007 | | | ||||| || | | |||| || | || | ||||| | || | |||| Sbjct 1881 TACAGATTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTTCCAATGGTTGTGATCAGA 1822 Query 128008 TGAGAGATCTACCTCCTCCGCAGTCCAA 128035 | || ||||||||||| || |||||| Sbjct 1821 AGCAAGGTCTACCTCCTCGGCTGTCCAA 1794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613065520829040