Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq24165 114 2e-20 seq310 104 4e-17 seq663 89.7 8e-13 >seq24165 Length=2677 Score = 114 bits (126), Expect = 2e-20 Identities = 292/440 (66%), Gaps = 11/440 (3%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||| |||| || || || |||||||||| | || || |||||| | ||| Sbjct 2592 CACCTTCCTCTCAAAGAAATTCGTCTTGCCCTGTAGCGAAATCATTTCCATCCAAGGGAA 2533 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 ||||| ||| ||| ||| || |||| ||||| | || | |||||| ||||| Sbjct 2532 GGGGTTGGCAGCGTTGTAGACCTTGGGGCATCCAAGAGCGACGAGAAGCCTGTCCGCCAC 2473 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 ||| || ||||| ||||| |||| ||| || || | || | ||| || || | Sbjct 2472 AAACTCAATGTATTGGCACATGAGCTCGGCGTTCATTCCAATGAGGCCAACTGGAAGAGA 2413 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACG-TT 159881 || || | || ||||||||||| || || || || | | || || | | | || Sbjct 2412 CTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGGGTGGGAATATT 2353 Query 159882 CGTACCCCGGC--TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939 ||| | | | ||| | | ||| || | |||||||| ||||||||||| || Sbjct 2352 CGTGGACGGTCGGTTGACGAGCATGCTGT------AGAGGAGGCAGGCAAAGTCGCAATG 2299 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || ||||| || | ||| ||||| ||| | | |||||| ||||||| || | Sbjct 2298 AAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCTGGCATGAGGCCCCT 2239 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCG 160058 | ||||||||||| |||| || |||| || | | || ||||| |||||||| || | Sbjct 2238 CTTCTTGAGCCAAAAGATGG-AACAGAAGCTCCCCGAGAAGAAGATACCCTCCACAGCGG 2180 Query 160059 CAAACGCCACGAGCCTCTCA 160078 | || ||||| | |||||| Sbjct 2179 CGAATGCCACTAATCTCTCA 2160 >seq310 Length=11085 Score = 104 bits (114), Expect = 4e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || |||||||| ||||||| ||||||| | | | | || |||||||| || || Sbjct 169 GTCAACGGTGAACTGGATGGCGTCAGCGGCAGGGCGGGTGCGTAGGTAGTACATTCCAGT 228 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 |||||||||||||| ||| |||| | |||||| || | ||| || | ||| || Sbjct 229 CTTTAGGCCCTTCTTCCATGCGTAAAAGTGCATCGAGGTGAGTCTGGCGAATGAGGGCTC 288 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 |||||| | | ||| || |||||||||||||||| | | || || || || ||||| Sbjct 289 GGCCATATATACGTTGAGGCTCTGGCTTTGGTCGATGTACGCGGCTCGGTCAGCTGCCAT 348 >seq663 Length=3190 Score = 89.7 bits (98), Expect = 8e-13 Identities = 226/341 (66%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 205069 TGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGG 205128 |||||||||| || |||| |||| || || ||| || ||||| | ||||| Sbjct 2057 TGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCTTGAAGACCTGGTGCCTCATTGGG 1998 Query 205129 ACACATCAGAGACCACATCTGATC-GTCTTTCACCCTCTCCATAAACAGGTCGCTGATCC 205187 || | ||| ||||| ||| || | | | ||| ||||||||||| || ||| | || Sbjct 1997 GCAAAACAGTGACCAG-TCTCCTCCGGCCTCCACTCTCTCCATAAATAGATCGGGTACCC 1939 Query 205188 ACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGT 205247 |||| | || || ||||| | ||| | | || | || |||||||||||| | Sbjct 1938 ACAGAGCATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCT 1879 Query 205248 CCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCC 205307 |||| | | ||||| |||||||| ||||| | | | || | ||| || | Sbjct 1878 CCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGCTCCCTTTC 1819 Query 205308 TCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCA 205367 ||||| ||||| || || || ||| | | ||||| | ||||||| ||| || | Sbjct 1818 TCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAACATTGGAA 1759 Query 205368 CCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAG 205408 |||||||||| || |||||||||| ||||| |||| Sbjct 1758 TTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAG 1718 Score = 89.7 bits (98), Expect = 8e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 203855 TGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGGCCCTTC 203914 || ||||||| ||||||| | | | | || |||||||| || ||||||||||||||| Sbjct 3190 TGGATGGCGTCAGCGGCAGGGCGGGTGCGTAGGTAGTACATTCCAGTCTTTAGGCCCTTC 3131 Query 203915 TGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATG 203974 | ||| |||| | |||||| || | ||| || | ||| |||||||| | | | Sbjct 3130 TTCCATGCGTAAAAGTGCATCGAGGTGAGTCTGGCGAATGAGGGCTCGGCCATATATACG 3071 Query 203975 TTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 || || |||||||||||||||| | | || || || || ||||| Sbjct 3070 TTGAGGCTCTGGCTTTGGTCGATGTACGCGGCTCGGTCAGCTGCCAT 3024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794582747892640