Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq23136 104 2e-17 seq17103 100 2e-16 seq49259 98.7 7e-16 seq4534 95.1 8e-15 seq20128 93.3 3e-14 seq2 91.5 1e-13 seq110 89.7 4e-13 seq4310 86.0 4e-12 seq43562 82.4 5e-11 seq23330 82.4 5e-11 >seq23136 Length=1347 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 ||||| || | |||| || || || || || || ||||||||| || |||| ||| Sbjct 1347 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCC 1288 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 || || || || |||| || |||||||||||||| | || | |||||| ||||| Sbjct 1287 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGA 1228 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || || || || | || | | | ||| | ||| || || |||||||| || || || Sbjct 1227 ATCTTCTGCTTCACATTCTCAATAGAGTCGGAGCTCTCGACCTCCAAAGTGATGGTCTTG 1168 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || || ||||||||||||||| Sbjct 1167 CCAGTCAAGGTCTTGACGAAGATCTGCATG 1138 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| ||||| || ||||| || | ||| ||| || || || || || ||||| Sbjct 1138 GCCTCCTCTTAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 1079 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || || | || || || | || || |||||||||||||| | || Sbjct 1078 CAAGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGAGG 1019 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||| || ||||| || || || |||| || ||| | | |||| | ||| || Sbjct 1018 AATGCCCTCCTTGTCCTGGATCTTCTGCTTTACATTCTCGATGC--TGTCCGAGCTCTCA 961 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || || ||||| || ||||| || ||||| |||||||| Sbjct 960 ACCTCGAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 911 >seq17103 Length=3258 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| |||| ||| | ||||| ||| || ||||| || || || || || Sbjct 2556 CCCCCGCGCAGGCGCAATACAAGATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCTGCT 2497 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||||| ||| |||| || | ||| |||||||| | ||| Sbjct 2496 AGTGTGCGGCCATCCTCAAGCTGTTTACCGGCAAAGATAAGACGTTGCTGATCAGGGGGG 2437 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| || || || || | || | | | ||| | ||| ||||| Sbjct 2436 ATACCCTCCTTGTCTTGAATCTTCTGCTTCACATTCTCAATCGAGTCCGAGCTCTCCACT 2377 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| ||||| || || || || ||||||||||| |||||||||||| Sbjct 2376 TCCAAGGTAATGGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCATG 2329 >seq49259 Length=868 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||| || ||||| || | ||| || || || || || || ||||||||| ||| | Sbjct 28 ACGAAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACC 87 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| ||||| || || || |||| || ||||| |||||||| | || | |||||| || Sbjct 88 ATCCTCCAACTGCTTGCCAGCAAAGATCAAACGTTGCTGATCGGGAGGAATGCCTTCCTT 147 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| || || || || | || | | | || | ||| || || |||||||| || Sbjct 148 GTCCTGGATCTTCTGCTTCACATTCTCAATCGAATCAGAGCTCTCTACCTCCAAAGTGAT 207 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || || || || ||||||||||||||| Sbjct 208 CGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 244 >seq4534 Length=5043 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39495 GCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAA 39554 |||||| | ||| || || | |||| ||||| || || || || ||||||||||| Sbjct 3444 GCCTCGAAGACGAAGGACTAGGTGCAGTGTGCTCTCCTTCTGGATGGAATAATCGGCCAC 3503 Query 39555 AACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTAC 39614 |||| ||||||| | ||| |||||| |||| || | ||||||||| || | ||| | Sbjct 3504 CGTGCGTCCATCGTCGAGTTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCGGGGGGGAT 3563 Query 39615 GCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTC 39674 |||||| ||||| || ||||| || || || | | | || | || || || Sbjct 3564 GCCTTCCTTGTCCTGGATCTTTTGCTTGATGTTCTCGATGCTATCGGAAGACTCGACCTC 3623 Query 39675 CAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 ||| || || || || || || | || || || ||||| ||||||| Sbjct 3624 CAAGGTGATCGTCTTGCCTGTCAGTGTCTTGACAAAGATTTGCATGT 3670 >seq20128 Length=1734 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | ||| || || ||||| || | |||| || ||||| || || || || || Sbjct 1316 GCCTCCCCTCAAGCGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGC 1257 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || |||| ||||| || |||| || || || |||||||| | ||| Sbjct 1256 CAAGGTGCGGCCGTCCTCCAGCTGTTTGCCTGCAAAGATCAAGCGTTGCTGATCAGGGGG 1197 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| || ||||| || | || | | | ||| | ||| || || Sbjct 1196 AATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCAATAGAGTCAGAGCTCTCAAC 1137 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || || || || || || || || || |||||||||||| Sbjct 1136 TTCCAAGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCATG 1088 >seq2 Length=13225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| | || |||| ||| | ||| || || || || || || |||||| Sbjct 12962 CCTCCACGCAATCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 13021 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| |||| || || || |||| || |||||||||||||| | ||| Sbjct 13022 AAGGTACGACCATCCTCCAGCTGCTTGCCTGCAAAGATCAAACGCTGCTGATCAGGGGGG 13081 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| || ||||| || || || || | || | | | ||||| | |||||| Sbjct 13082 ATGCCCTCCTTGTCCTGAATCTTCTGCTTGACATTCTCAATAGAGTCTGAGGATTCCACT 13141 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||| || || || || | || |||||||||||||||||| Sbjct 13142 TCGAGGGTAATCGTCTTGCCGGTGAGCGTCTTTACGAAGATCTGCATG 13189 >seq110 Length=9649 Score = 89.7 bits (98), Expect = 4e-13 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | |||||| || ||||| || | || ||| || || ||||| |||||||| Sbjct 72 CCACCCCTCAAACGAAGCACCAAGTGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCG 131 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | || || || | || || | |||||||||||| | ||| Sbjct 132 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 191 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| || ||||| || || || || | || | | | || | | ||||| Sbjct 192 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATGCTATCAGAGGACTCCACC 251 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTTCG 39732 |||| |||||||| || || || ||||| || |||||||| ||||||| |||||| | Sbjct 252 TCCAGGGTAATTGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATGT--TGTGTTATG 309 Query 39733 TTGGTT 39738 |||||| Sbjct 310 TTGGTT 315 >seq4310 Length=8047 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| | ||||||||||||||| | ||| ||| ||||| || || || || || Sbjct 37 GCCTCCTCTTAGACGCAGTACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGC 96 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | ||| |||| |||| || || || | || || | |||||| ||||| | || Sbjct 97 TAGCGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGTTGATCAGGTGG 156 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| || || ||||| | | | | | ||| | | |||||| Sbjct 157 AATGCCCTCCTTGTCTTGGATCTTCTGTTTGACGTTTTCAATAGAGTCAGAGGATTCCAC 216 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGT 39726 || | ||||| || || || || ||||| || |||||||| |||||| |||| Sbjct 217 TTCGAGGGTAATAGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATGCTGTGT 271 >seq43562 Length=381 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| ||||| || ||||| || | ||| ||| || || || || || ||||| Sbjct 124 GCCTCCTCTTAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 183 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || || | || || || | || || |||||||||||||| | || Sbjct 184 CAAGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCGGGAGG 243 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||| || ||||| || || || |||| || ||| | | | || | | || Sbjct 244 AATGCCCTCCTTGTCCTGGATCTTCTGCTTTACATTCTCGATGC--TATCAGAGGACTCG 301 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | ||||| || || || || ||||||||||| |||||||||||| Sbjct 302 ACCTCAAGGGTAATGGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCATG 352 >seq23330 Length=2255 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| | || |||| ||| | |||| || || || || || || || ||| Sbjct 1744 CCACCACGCAATCTAAGCACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCC 1803 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||| || || |||| || | ||||| ||||| | ||| Sbjct 1804 AGGGTGCGACCATCTTCGAGTTGCTTGCCTGCAAAGATGAGGCGCTGTTGATCAGGGGGA 1863 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| || ||||| || || || || | || | | || ||| | ||| ||||| Sbjct 1864 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATTGAGTCAGAGCTCTCCACT 1923 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || || || || || | || || || |||||||||||| Sbjct 1924 TCCAAAGTGATAGTCTTGCCAGTGAGCGTCTTCACAAAGATCTGCATG 1971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347125771942202