Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq663 192 7e-44 seq310 174 2e-38 seq24165 116 5e-21 seq35896 109 7e-19 seq5862 109 7e-19 seq24166 96.9 4e-15 >seq663 Length=3190 Score = 192 bits (212), Expect = 7e-44 Identities = 707/1082 (65%), Gaps = 33/1082 (3%) Strand=Plus/Plus Query 111924 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGG 111983 ||| | ||||||||| | || || | |||| |||||| ||||| ||| | |||| ||| Sbjct 1752 GGTCTAATTCCAATGTTGCGAGTGTACAACGACACAGCACGCTACGTAGATCAAGGTGGT 1811 Query 111984 CGTC---GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAG 112040 | | |||||| | | ||| ||||||| ||||| ||||||||||| ||| | ||| Sbjct 1812 GGCAAGAGAAAGGGAGCATTTGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAG 1871 Query 112041 TTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCC 112100 ||||| ||| || ||||| || | || ||| ||| | | |||||||||| Sbjct 1872 TTCCTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCAGCGAGCCAGAGATCTCTTCTAT 1931 Query 112101 GCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTC 112160 ||||| ||| | || ||||| || ||| ||||||| |||| | || | ||||| || Sbjct 1932 GCTCTGTGGGTACCCGATCTATTTATGGAGAGAGTGGAGGCCGGAGGAGACTGGTCACTG 1991 Query 112161 TTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC--GTGGGTGAG--GAGTTTGAAGC 112216 ||||| || | ||||||| ||||| || | | | ||||| ||| || ||||| | Sbjct 1992 TTTTGCCCCAATGAGGCACCAGGTCT-TC--AAGACAAGTGGG-GAGCTGAATTTGAGGA 2047 Query 112217 CCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCA--GCTGCCGAT 112274 || |||||| || ||| || | ||||| | ||| | || || || || Sbjct 2048 GCTGTACACACGCTATGAGCGCGAGGGCCGGGC-AAGGCG-TGCTGTCAAGGCCCAAGAG 2105 Query 112275 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAA 112334 | ||| ||||| | || |||||| ||||||||||| || |||||||| |||||| Sbjct 2106 CTTTGGTTTGCTATCTTGGAGGCTCAAATAGAGACTGGTACTCCTTATATGCTCTACAAA 2165 Query 112335 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTC 112394 ||| ||| ||| || || || || | | || || | |||||||||| Sbjct 2166 GACCACTGCAACGCGAAATCCAACCATCAGCACCTCGGCACCATTCAATGTTCCAACCTT 2225 Query 112395 TGTACAGAAATCTTGGAATTTA---CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 112451 ||||| ||||| | | || | || |||||| | ||| || ||||| || || Sbjct 2226 TGTACCGAAATTGTCCAGTTCACATCACCCAAAGAAG---TGGCCGTATGTAATCTTGCT 2282 Query 112452 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 112511 ||||| ||| | || || | |||||| |||| || || |||||| |||| || ||| Sbjct 2283 TCAATGGCTTTGCCTAAATTTGTGGACAAGGAGAAAATGATGTTTGATCATGAGAAGCTC 2342 Query 112512 CACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 112571 || || || ||||| ||| | |||| || || || || | ||| Sbjct 2343 TTTGAGGTGGTCAAGGTGGTCACGCGCAACTTGAACAAGGTGATAGACGTCAACTACTAC 2402 Query 112572 CCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCA 112630 || ||| ||| || | || || | | ||| | || |||||||| || || || Sbjct 2403 CCAGTTCCAGA-AGCCGAGCACTCCAACAGACGTCACAGGCCCATTGGTCTTGGCGTACA 2461 Query 112631 AGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT-TGATTCCGACGAAGCGAAGG 112689 || || || || || ||| |||| | || || || || ||| || || || | Sbjct 2462 GGGCCTAGCTGACGTCTTCCTTCTCTTGCG-CATGCCTTGGGATAGTGAAGAGGCACGCG 2520 Query 112690 AAATCAATGCGCG-TATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAG 112748 |||| |||| || ||||||||||| || ||||| || | | ||| Sbjct 2521 CCCTCAA-CCGCGACATTTTTGAGACAATCTACTTTGCCGCCCTCACATCATCTAATGAG 2579 Query 112749 TTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTG 112808 ||||| ||| | || || || || |||| || ||||| | |||| | Sbjct 2580 CTGGCAAAGGAGCAAGGGCCCTACCCCACATTTGCCGGCTCTCCCTCGAGCAAAGGTCTT 2639 Query 112809 CTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-TCACTACGACTGGGACGCTCTCAA 112867 ||||| |||||||||||| | | |||| ||| || | | || |||| | ||||| Sbjct 2640 CTTCAGTTTGATATGTGGAATGTTGAG-CCATCCTCCCGTTGGGATTGGGCGTCCCTCAA 2698 Query 112868 GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT--TTGATGGCACCAATGCCAACA 112925 || | |||| |||| | || || || || || ||| ||| | ||||| ||||| || Sbjct 2699 GGCAAGCATTGTGGAGCACGGCCTGCGAAATAG-CTTACTTG-TCGCACCTATGCCGACG 2756 Query 112926 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATC 112985 || || || | || || |||| || ||||| |||||||| |||||||| | |||||| Sbjct 2757 GCTTCTACTTCCCAGATACTGGGAAACAATGAGTGCTTTGAGCCCTACACTTCCAACATC 2816 Query 112986 TA 112987 || Sbjct 2817 TA 2818 >seq310 Length=11085 Score = 174 bits (192), Expect = 2e-38 Identities = 703/1082 (65%), Gaps = 33/1082 (3%) Strand=Plus/Minus Query 111924 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGG 111983 ||| | ||||||||| | || || | |||| |||||| ||||| ||| | |||| ||| Sbjct 1620 GGTCTAATTCCAATGTTGCGAGTGTACAACGACACAGCACGCTACGTAGATCAAGGTGGT 1561 Query 111984 CGTC---GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAG 112040 | | |||||| | | ||| ||||||| ||||| ||||||||||| ||| | ||| Sbjct 1560 GGCAAGAGAAAGGGAGCATTTGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAG 1501 Query 112041 TTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCC 112100 || | ||| || ||||| || | || ||| ||| | | |||||||||| Sbjct 1500 TTTTTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCAGCGAGCCAGAGATCTCTTCTAT 1441 Query 112101 GCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTC 112160 ||||| ||| | || ||||| |||||| ||||||| |||| | || | ||||| || Sbjct 1440 GCTCTGTGGGTACCCGATCTGTTCATGGAGAGAGTGGAGGCCGGAGGAGACTGGTCACTG 1381 Query 112161 TTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCC--GTGGGTGAG--GAGTTTGAAGC 112216 ||||| || | ||||||| ||||| || | | | ||||| ||| || ||||| | Sbjct 1380 TTTTGCCCCAATGAGGCACCAGGTCT-TC--AAGACAAGTGGG-GAGCTGAATTTGAGGA 1325 Query 112217 CCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCA--GCTGCCGAT 112274 || |||||| || ||| || | ||||| | ||| | || || || || Sbjct 1324 GCTGTACACACGCTATGAGCGCGAGGGCCGGGC-AAGGCG-TGCTGTCAAGGCCCAAGAG 1267 Query 112275 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAA 112334 | ||| ||||| | || | |||| ||||||||||| || |||||||| ||||| Sbjct 1266 CTTTGGTTTGCTATCTTGGAGGCCCAAATAGAGACTGGTACTCCTTATATGCTCTACAAG 1207 Query 112335 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTC 112394 ||| ||| ||| || || || || | | || || | |||||||||| Sbjct 1206 GACCACTGCAACGCGAAATCCAACCATCAGCACCTCGGCACCATTCAATGTTCCAACCTT 1147 Query 112395 TGTACAGAAATCTTGGAATTTA---CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 112451 ||||| ||||| | | || | || |||||| | ||| |||||||| || || Sbjct 1146 TGTACTGAAATTGTCCAGTTCACATCACCCAAAGAAG---TGGCCGTGTGTAATCTTGCT 1090 Query 112452 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 112511 ||||| ||| | ||||| | |||||| |||| || || |||||| |||| || ||| Sbjct 1089 TCAATGGCTTTGCCCAAATTTGTGGACAAGGAGAAAATGATGTTTGATCATGAGAAGCTC 1030 Query 112512 CACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 112571 || || || ||||| ||| | |||| || || || || | ||| Sbjct 1029 TTTGAGGTGGTCAAGGTGGTCACGCGCAACTTGAACAAGGTGATAGACGTCAACTACTAC 970 Query 112572 CCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCA 112630 || ||| ||| || | || || | | ||| | || ||||| || || || || Sbjct 969 CCAGTTCCAGA-AGCCGAGCACTCCAACAGACGCCACAGGCCCATTGGCCTTGGCGTACA 911 Query 112631 AGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT-TGATTCCGACGAAGCGAAGG 112689 || || || || || ||| |||| | || || || || || ||| || || | Sbjct 910 GGGCCTAGCTGACGTCTTCCTTCTCTTGCG-CATGCCTTGGGACAGCGAAGAGGCACGCG 852 Query 112690 AAATCAATGCGCG-TATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAG 112748 |||| |||| || ||||||||||| || ||||| || | | ||| Sbjct 851 CCCTCAA-CCGCGACATTTTTGAGACAATCTACTTTGCCGCCCTCACATCATCTAATGAG 793 Query 112749 TTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTG 112808 ||||| ||| | || || || || |||| || ||||| | |||| | Sbjct 792 CTGGCAAAGGAGCAAGGGCCCTACCCCACATTTGCCGGCTCTCCCACGAGCAAAGGTCTA 733 Query 112809 CTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-TCACTACGACTGGGACGCTCTCAA 112867 ||||| ||||| |||||| | | ||| ||| || | | || |||| | ||||| Sbjct 732 CTTCAGTTTGACATGTGGAATGTCGAG-CCATCCTCCCGTTGGGATTGGGCGTCCCTCAA 674 Query 112868 GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT--TTGATGGCACCAATGCCAACA 112925 || | |||| |||| | ||||| || || || ||| ||| | || || ||||| || Sbjct 673 GGCAAGCATTGTGGAGCACGGTCTGCGAAATAG-CTTACTTG-TCGCGCCTATGCCGACG 616 Query 112926 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATC 112985 || || || | || || |||| || ||||| |||||||| ||||||||| | || ||| Sbjct 615 GCTTCTACTTCCCAGATACTGGGAAACAATGAGTGCTTTGAGCCCTACACGTCCAATATC 556 Query 112986 TA 112987 || Sbjct 555 TA 554 >seq24165 Length=2677 Score = 116 bits (128), Expect = 5e-21 Identities = 180/255 (71%), Gaps = 9/255 (4%) Strand=Plus/Plus Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 ||||||| || | ||||| || |||||| | | ||||| | |||||| |||| Sbjct 2029 ATAGACACTTACGTGAAGGACCCAGCAGAGAAGGATCGCCTCTTCAATGCCATCGAAACG 2088 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC--GC 102168 || || | | | | |||||||| || ||||| | || ||| |||| |||| | || Sbjct 2089 GTGCCTTCTGTCAAGAAGAAAGCTGAATGGGCCCTCAAATGGATTGA---AAAGGCTGGC 2145 Query 102169 G----TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 | | | || ||||| || | | ||||| || ||| ||||||||||||||||| Sbjct 2146 GCAGATACATTCCCTGAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTCTCG 2205 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || |||||| | || | ||||||||||||| | || ||||||||||| ||||||||| Sbjct 2206 GGGAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCAGGCCTCTGCTTC 2265 Query 102285 TCCAACGAGCTTATC 102299 ||| ||| | ||| Sbjct 2266 AGCAATGAGTTGATC 2280 >seq35896 Length=749 Score = 109 bits (120), Expect = 7e-19 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 ||||||| || | ||||| ||| |||||| | | ||||| | |||||| |||| Sbjct 73 ATAGACACTTACGTGAAGGACCCTGCAGAGAAGGATCGCCTCTTCAATGCCATCGAAACG 132 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC--GC 102168 || || | | | |||||||| || ||||| | | ||| |||| |||| | || Sbjct 133 GTGCCTTCGGTCAAGAAGAAAGCTGAATGGGCCCTCAGATGGATTGA---AAAGGCTGGC 189 Query 102169 G----TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 | | | ||| ||||| || | | ||||| || ||| ||||||||||||||||| Sbjct 190 GCAGATACATTTCCTGAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTCTCG 249 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 ||| |||||| | || | |||||| |||||| | || || |||||||| ||||||||| Sbjct 250 GGTAGCTTCTGTTCCATCTTTTGGCTTAAGAAGAGGGGCCTAATGCCAGGCCTCTGCTTC 309 Query 102285 TCCAACGA 102292 ||| || Sbjct 310 AGCAATGA 317 >seq5862 Length=2677 Score = 109 bits (120), Expect = 7e-19 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 ||||||| || | ||||| ||| |||||| | | ||||| | |||||| |||| Sbjct 1595 ATAGACACTTACGTGAAGGACCCTGCAGAGAAGGATCGCCTCTTCAATGCCATCGAAACG 1654 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC--GC 102168 || || | | | |||||||| || ||||| | | ||| |||| |||| | || Sbjct 1655 GTGCCTTCGGTCAAGAAGAAAGCTGAATGGGCCCTCAGATGGATTGA---AAAGGCTGGC 1711 Query 102169 G----TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 | | | ||| ||||| || | | ||||| || ||| ||||||||||||||||| Sbjct 1712 GCAGATACATTTCCTGAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTCTCG 1771 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 ||| |||||| | || | |||||| |||||| | || || |||||||| ||||||||| Sbjct 1772 GGTAGCTTCTGTTCCATCTTTTGGCTTAAGAAGAGGGGCCTAATGCCAGGCCTCTGCTTC 1831 Query 102285 TCCAACGA 102292 ||| || Sbjct 1832 AGCAATGA 1839 >seq24166 Length=499 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/229 (70%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 ||||||| || | ||||| || |||||| | | ||||| | |||||| |||| Sbjct 274 ATAGACACTTACGTGAAGGACCCAGCAGAGAAGGATCGCCTCTTCAATGCCATCGAAACG 333 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC--GC 102168 || || | | | | |||||||| || ||||| | || ||| |||| |||| | || Sbjct 334 GTGCCTTCTGTCAAGAAGAAAGCTGAATGGGCCCTCAAATGGATTGA---AAAGGCTGGC 390 Query 102169 G----TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 | | | || ||||| || | | ||||| || ||| ||||||||||||||||| Sbjct 391 GCAGATACATTCCCTGAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTCTCG 450 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAG 102273 || |||||| | || | ||||||||||||| | || |||||||||| Sbjct 451 GGGAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCAG 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620295512027680