Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq310 217 2e-51 seq663 196 6e-45 seq24165 118 1e-21 seq35896 111 2e-19 seq5862 111 2e-19 seq24166 84.2 3e-11 >seq310 Length=11085 Score = 217 bits (240), Expect = 2e-51 Identities = 691/1059 (65%), Gaps = 23/1059 (2%) Strand=Plus/Plus Query 110026 TACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCG-AAGGGAAG 110084 || || ||||||||||| | || | | ||| | |||||| | ||| |||| | | Sbjct 821 TAGATTGTCTCAAAAATGTCGCGGTTGAGGGCGCGTGCCTCTTCGCTGTCCCAAGGCATG 880 Query 110085 ACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATG-CT 110143 || | |||| || || || ||||| ||||| || || || |||||||| | || | Sbjct 881 CGCA-AGAGAAGGAAGACGTCAGCTAGGCCCTGTACGCCAAGGCCAATGGGCCTGTGGCG 939 Query 110144 TCATGTTAGAGCG-TCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGA 110199 || |||| ||| | ||| | |||| || ||||| ||||| ||| || ||| Sbjct 940 TC-TGTTGGAGTGCTCG----GCTTCTGGAACTGGGTAGTAGTTGACGTCTATCACCTTG 994 Query 110200 TTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTC 110259 || | || ||| || ||| | ||| ||| || || | ||| ||| | | Sbjct 995 TTCAAGTTGCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCATGATCAAACATCATT 1054 Query 110260 GTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCG 110319 ||||||| | ||| ||||||| | ||| || || |||||||| ||||| | | | Sbjct 1055 TTCTCCTTGTCCACAAATTTGGGCAAAGCCATTGAAGCAAGATTACACACGGC---CACT 1111 Query 110320 TCTTTGTCGG---TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCC 110376 |||||| | || | | | |||||| ||||| | |||||||| | |||| || Sbjct 1112 TCTTTGGGTGATGTGAACTGGACAATTTCAGTACAAAGGTTGGAACATTGAATGGTGCCG 1171 Query 110377 AAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCA 110436 | || || || || ||||| | |||||| ||||| |||||||| || || |||||| Sbjct 1172 AGGTGCTGATGGTTGGATTTCGCGTTGCAGTGGTCCTTGTAGAGCATATAAGGAGTACCA 1231 Query 110437 GTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTT-GCGTT 110495 || || | || | || | || || ||| | || ||| ||||| || || Sbjct 1232 GTCTCTATTTGGGCCTCCAAGATAGCAAACCAAAGCTCTTGGGCCTTGACAGCACGCCTT 1291 Query 110496 AGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATC 110555 || | || || ||| || ||||||| ||||||||||| ||| || || Sbjct 1292 -GCCCGGCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTC 1350 Query 110556 AGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCT 110615 |||||| |||| | ||| || || || ||||| | ||| || |||| || || Sbjct 1351 TTGAAGACCTGGTGCCTCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCT 1410 Query 110616 CTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTC 110675 || ||||||||| || || | ||||| || |||| || || | | || |||||| Sbjct 1411 CTCCATGAACAGATCGGGTACCCACAGAGCATAGAAGAGATCTCTGGCTCGCTGCTCTTC 1470 Query 110676 ATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAG 110735 | || ||||| ||||||||||| || | ||| |||| |||||| || || || Sbjct 1471 CTTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAG 1530 Query 110736 ATAGACAGCGATGGATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGC 110792 ||||| || | | |||||| | | ||| | || | || |||||||||||| | Sbjct 1531 ATAGATTGCAAATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTC 1590 Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852 ||| | || | | ||| ||||| | || | ||| || || || ||||| || Sbjct 1591 GTTGTACACTCGCAACATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTA 1650 Query 110853 GGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT 110912 || ||| |||||||| | ||| | | | ||| || || || || | ||| ||| Sbjct 1651 CGAGTTAGCAGCACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAAT 1710 Query 110913 TTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972 ||||||| | | ||||| |||| || || || || ||| | | || || Sbjct 1711 CAAAGCACACTGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAAC 1770 Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032 |||||||| ||||| | ||| || | ||||| || |||||||| ||||| || || || Sbjct 1771 GAGAAAGCACGAAGAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGC 1830 Query 111033 ATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTC 111071 |||| ||||||| |||||| ||| || ||||| || Sbjct 1831 ATGAGTGAACAGTTGTTGGGAGATCAGATTATATGTCTC 1869 >seq663 Length=3190 Score = 196 bits (216), Expect = 6e-45 Identities = 686/1059 (65%), Gaps = 23/1059 (2%) Strand=Plus/Minus Query 110026 TACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCG-AAGGGAAG 110084 || || ||||||||||| | || | | ||| | |||||||| || |||| | | Sbjct 2551 TAGATTGTCTCAAAAATGTCGCGGTTGAGGGCGCGTGCCTCTTCACTATCCCAAGGCATG 2492 Query 110085 ACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATG-CT 110143 || | |||| || || || ||||| ||||| || || ||||||||||| | || | Sbjct 2491 CGCA-AGAGAAGGAAGACGTCAGCTAGGCCCTGTACGCCAAGACCAATGGGCCTGTGACG 2433 Query 110144 TCATGTTAGAGCG-TCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGA 110199 || |||| ||| | ||| | |||| || ||||| ||||| ||| || ||| Sbjct 2432 TC-TGTTGGAGTGCTCG----GCTTCTGGAACTGGGTAGTAGTTGACGTCTATCACCTTG 2378 Query 110200 TTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTC 110259 || | || ||| || ||| | ||| ||| || || | ||| ||| | | Sbjct 2377 TTCAAGTTGCGCGTGACCACCTTGACCACCTCAAAGAGCTTCTCATGATCAAACATCATT 2318 Query 110260 GTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCG 110319 ||||||| | ||| |||| || | ||| || || |||||||| || || | | | Sbjct 2317 TTCTCCTTGTCCACAAATTTAGGCAAAGCCATTGAAGCAAGATTACATACGGC---CACT 2261 Query 110320 TCTTTGTCGG---TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCC 110376 |||||| | || | | | |||||| ||||| | |||||||| | |||| || Sbjct 2260 TCTTTGGGTGATGTGAACTGGACAATTTCGGTACAAAGGTTGGAACATTGAATGGTGCCG 2201 Query 110377 AAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCA 110436 | || || || || ||||| | |||||| || || |||||||| || || |||||| Sbjct 2200 AGGTGCTGATGGTTGGATTTCGCGTTGCAGTGGTCTTTGTAGAGCATATAAGGAGTACCA 2141 Query 110437 GTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTT-GCGTT 110495 || || | || | || | || || ||| | || ||| ||||| || || Sbjct 2140 GTCTCTATTTGAGCCTCCAAGATAGCAAACCAAAGCTCTTGGGCCTTGACAGCACGCCTT 2081 Query 110496 AGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATC 110555 || | || || ||| || ||||||| ||||||||||| ||| || || Sbjct 2080 -GCCCGGCCCTCGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTC 2022 Query 110556 AGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCT 110615 |||||| |||| | ||| || || || ||||| | ||| || |||| || || Sbjct 2021 TTGAAGACCTGGTGCCTCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCT 1962 Query 110616 CTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTC 110675 || ||| || || || || | ||||| || |||| || || | | || |||||| Sbjct 1961 CTCCATAAATAGATCGGGTACCCACAGAGCATAGAAGAGATCTCTGGCTCGCTGCTCTTC 1902 Query 110676 ATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAG 110735 | || ||||| ||||||| || || | ||| |||| |||||| || || || Sbjct 1901 CTTGCCGTGGTTCTTTTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAG 1842 Query 110736 ATAGACAGCGATGGATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGC 110792 ||||| || | | |||||| | | ||| | || | || |||||||||||| | Sbjct 1841 ATAGATTGCAAATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTC 1782 Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852 ||| | || | | ||| ||||| | || | |||| || || || ||||| || Sbjct 1781 GTTGTACACTCGCAACATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTA 1722 Query 110853 GGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT 110912 || ||| |||||||| | ||| | | | ||| || || || || | ||| ||| Sbjct 1721 CGAGTTAGCAGCACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAAT 1662 Query 110913 TTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972 ||||||| | | ||||| |||| || || || || ||| | | || || Sbjct 1661 CAAAGCACACTGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAAC 1602 Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032 |||||||| ||||| | ||| || | ||||| || |||||||| ||||| || || || Sbjct 1601 GAGAAAGCACGAAGAAAGCTGTGGTCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGC 1542 Query 111033 ATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTC 111071 |||| ||||||| |||||| ||| || ||||| || Sbjct 1541 ATGAGTGAACAGTTGTTGGGAGATCAGATTATATGTCTC 1503 >seq24165 Length=2677 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || |||||| || ||||| | ||| | |||||| |||||||| || || Sbjct 2313 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCC 2254 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || || ||||| ||||||||||||| ||| || || || || |||||||| Sbjct 2253 TGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGAT 2194 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAG 119649 ||||||||| |||||| || | || | ||||| Sbjct 2193 ACCCTCCACAGCGGCGAATGCCACTAATCTCTCAG 2159 >seq35896 Length=749 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || |||||| || ||||| | ||| | ||||| |||||||| || || Sbjct 357 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGGCC 298 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||| || || || ||||| ||||||||||||| ||| || || || || |||||||| Sbjct 297 TGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAGAT 238 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||||||| |||||| || | || | ||||| ||| Sbjct 237 ACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAA 199 >seq5862 Length=2677 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || |||||| || ||||| | ||| | ||||| |||||||| || || Sbjct 1879 GGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGGCC 1820 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||| || || || ||||| ||||||||||||| ||| || || || || |||||||| Sbjct 1819 TGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAGAT 1760 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||||||| |||||| || | || | ||||| ||| Sbjct 1759 ACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAA 1721 >seq24166 Length=499 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 |||||||| || || ||||| ||||||||||||| ||| || || || || |||||||| Sbjct 497 GGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATA 438 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAG 119649 ||||||||| |||||| || | || | ||||| Sbjct 437 CCCTCCACAGCGGCGAATGCCACTAATCTCTCAG 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588551981453200