Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq663 179 4e-40 seq310 161 1e-34 seq24165 127 2e-24 seq5862 98.7 1e-15 seq35896 95.1 1e-14 seq24166 84.2 3e-11 >seq663 Length=3190 Score = 179 bits (198), Expect = 4e-40 Identities = 539/824 (65%), Gaps = 15/824 (2%) Strand=Plus/Minus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 |||| ||| | |||||| ||||| | |||||||| | ||| || || | | || || Sbjct 2249 TGTGAACTGGACAATTTCGGTACAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTGATG 2190 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| || |||||| || ||||||||||| || || || || ||||| | || Sbjct 2189 GTTGGATTTCGCGTTGCAGTGGTCTTTGTAGAGCATATAAGGAGTACCAGTCTCTATTTG 2130 Query 106624 TGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATG-GCGTTGGCCCGTCCCT 106682 | || | || || ||| | || ||| ||| || ||| |||| |||| Sbjct 2129 AGCCTCCAAGATAGCAAACCAAAGCTCTTGGGCCTTGACAGCACGCCTTG-CCCGGCCCT 2071 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742 | ||| || |||||| || | ||||| || | ||| | ||| ||||||| Sbjct 2070 CGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCTTGAAGACCTG 2011 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 |||||| | || || || || ||||| | || || |||| || | || ||| || | Sbjct 2010 GTGCCTCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATAAATA 1951 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 106862 | || || | |||||| | | ||||||||||| || |||||| | || |||| Sbjct 1950 GATCGGGTACCCACAGAGCATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGT 1891 Query 106863 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 | | | ||| |||||||| | ||| ||||||||||| ||||| ||||||| ||| | Sbjct 1890 TCTTTTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAA 1831 Query 106923 TAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 106979 | |||||||| | ||| |||||| ||| ||||| |||||| |||| | || | Sbjct 1830 ATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTC 1771 Query 106980 GAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATT 107037 | | ||||||||| | ||| | ||| || || || |||| || |||||| ||| Sbjct 1770 GCAACATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAG--TTAGC 1713 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 || | | | || | | || || || || || | ||| || || ||||| Sbjct 1712 AGCACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACA 1653 Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC---CTTGTTGGCGATAAGGAA 107154 || |||| || |||| || || | || ||| || | |||| || || || Sbjct 1652 CTGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACG---AGAAA 1596 Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 ||| || | ||| |||||||| || ||||||||||| || || || || || ||| | Sbjct 1595 GCACGAAGAAAGCTGTGGTCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGT 1536 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274 ||||| |||||| ||| | ||||||||||| |||| ||||| || Sbjct 1535 GAACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACAGCTCTGATGTCAGTTTTATG 1476 Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCA 107318 | || | || || ||||| ||||||| ||||||| |||||| Sbjct 1475 CAGTCCCACAGCAACTCGCATCAACATGTGTTGGGGTCTTTCCA 1432 >seq310 Length=11085 Score = 161 bits (178), Expect = 1e-34 Identities = 535/824 (65%), Gaps = 15/824 (2%) Strand=Plus/Plus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 |||| ||| | |||||| ||||| | |||||||| | ||| || || | | || || Sbjct 1123 TGTGAACTGGACAATTTCAGTACAAAGGTTGGAACATTGAATGGTGCCGAGGTGCTGATG 1182 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| || |||||| |||||||||||||| || || || || ||||| | || Sbjct 1183 GTTGGATTTCGCGTTGCAGTGGTCCTTGTAGAGCATATAAGGAGTACCAGTCTCTATTTG 1242 Query 106624 TGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAATG-GCGTTGGCCCGTCCCT 106682 | || | || || ||| | || ||| ||| || ||| |||| |||| Sbjct 1243 GGCCTCCAAGATAGCAAACCAAAGCTCTTGGGCCTTGACAGCACGCCTTG-CCCGGCCCT 1301 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742 | ||| || |||||| || | ||||| || | ||| | ||| ||||||| Sbjct 1302 CGCGCTCATAGCGTGTGTACAGCTCCTCAAATTCAGCTCCCCACTTGTCTTGAAGACCTG 1361 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 |||||| | || || || || ||||| | || || |||| || | || |||||| | Sbjct 1362 GTGCCTCATTGGGGCAAAACAGTGACCAGTCTCCTCCGGCCTCCACTCTCTCCATGAACA 1421 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 106862 | || || | |||||| | | ||||||||||| || |||||| | || |||| Sbjct 1422 GATCGGGTACCCACAGAGCATAGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGT 1481 Query 106863 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 | | | ||| | ||||| | ||| ||||||||||| ||||| ||||||| ||| | Sbjct 1482 TCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAA 1541 Query 106923 TAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 106979 | |||||||| | ||| |||||| ||| ||||| |||||| |||| | || | Sbjct 1542 ATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTC 1601 Query 106980 GAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATT 107037 | | ||||||||| | ||| | || || || || |||| || |||||| ||| Sbjct 1602 GCAACATTGGAATTAGACCGTTGGACGTGCCGTTCGTGCCCCTGATGTACGAG--TTAGC 1659 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 || | | | || | | || || || || || | ||| || || ||||| Sbjct 1660 AGCACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACA 1719 Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC---CTTGTTGGCGATAAGGAA 107154 || |||| || |||| || || | || ||| || | |||| || || || Sbjct 1720 CTGTTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACG---AGAAA 1776 Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 ||| || | ||| || ||||| || ||||||||||| || || || || || ||| | Sbjct 1777 GCACGAAGAAAGCTGTGGCCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGT 1836 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274 ||||| |||||| ||| | ||||||||||| || | ||||| || Sbjct 1837 GAACAGTTGTTGGGAGATCAGATTATATGTCTCCAACACCGCTCTGATGTCAGTTTTATG 1896 Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCA 107318 | || | || || ||||| ||||||| |||||| |||||| Sbjct 1897 CAGTCCTACAGCAACTCGCATCAACATGTGTTGGGGCCTTTCCA 1940 >seq24165 Length=2677 Score = 127 bits (140), Expect = 2e-24 Identities = 310/462 (67%), Gaps = 17/462 (4%) Strand=Plus/Minus Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 |||| |||| |||||||||| | | |||| ||| | |||||| || ||||| | | Sbjct 2480 TCCGCCACAAACTCAATGTATTGGCACATGAGCTCGGCGTTCATTCCAATGAGGCCAACT 2421 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GCGTG 117224 || || | || | | ||| | |||||||| || || ||||| || | ||| | ||| Sbjct 2420 GGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGGGTG 2361 Query 117225 GATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 | | |||| | | |||| || ||| || | | || ||| || |||||| || Sbjct 2360 GGAATATTCG-TGGACGGTCGGTTGACGAGCATGCTGTAGAGGAGG--CA-GGCAAAGTC 2305 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 || || |||||||||| | || | ||||| |||||| |||||||||||||| Sbjct 2304 GCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAGGCCTGGCATGAG 2245 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 |||| |||||| | |||| | || | ||||| ||| |||||||||||||||||||| Sbjct 2244 GCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGATACCCTCCAC 2185 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAA------GGAGCGAGACTTTGTGTCAAACCA 117455 | || || || | | | ||| | ||| | || || |||| |||| ||| Sbjct 2184 AGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTT---TCAATCCA 2128 Query 117456 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 117515 ||| | ||||||| || ||||||| | | | || || |||| |||||| | || | Sbjct 2127 TTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGGCATTGAAGAG 2068 Query 117516 CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAA 117557 | | ||| || | | ||||| | ||| |||| ||||| Sbjct 2067 GCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAA 2026 >seq5862 Length=2677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 409/634 (65%), Gaps = 21/634 (3%) Strand=Plus/Minus Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 |||| |||| |||||||||| | |||| ||| | |||||| || ||||| | | Sbjct 2046 TCCGCCACAAACTCAATGTATTGACACATGAGCTCGGCGTTCATTCCAATGAGGCCAACT 1987 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GCGTG 117224 || || | || | | ||| | |||||||| || || ||||| || | ||| | ||| Sbjct 1986 GGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGGGTG 1927 Query 117225 GATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 | | || | | | |||| || ||| || | | | ||| || |||||| || Sbjct 1926 GGAATATTAG-TGGATGGTCGGTTGACGAGCATGCTGTATAGGAGG--CA-GGCAAAGTC 1871 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 || || |||||||||| | || | |||||| |||||| ||||||||||| || Sbjct 1870 GCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGGCCTGGCATTAG 1811 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 |||| |||||| | |||| | || | ||||| || |||||||||||||||||||| Sbjct 1810 GCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAGATACCCTCCAC 1751 Query 117402 ACACGCAAACGCAAAAAGGCGCTCGGCGAA------GGAGCGAGACTTTGTGTCAAACCA 117455 | || || || | | | ||| | || | || || |||| |||| ||| Sbjct 1750 AGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTTT---TCAATCCA 1694 Query 117456 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 117515 | | | ||||||| || ||||||| | | || || |||| |||||| | || | Sbjct 1693 TCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGCATTGAAGAG 1634 Query 117516 CTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCC 117575 | | ||| || | ||||| | ||| |||| ||||| ||||| |||| Sbjct 1633 GCGATCCTTCTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGAATACATTTCCGA 1574 Query 117576 ATGAACCATTTCATTATGGC-AT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGC 117633 |||| | ||| ||||| || ||| | ||||||| |||| || || ||||| Sbjct 1573 GTGAATGTTCTCA--ATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGGAATCTGA 1516 Query 117634 ACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAG 117693 || || | || | | |||||| ||||| ||||| ||| |||||||| Sbjct 1515 ACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGACGCAGCAAAG 1456 Query 117694 AATGCCAGGATGTACTTTATGAATTTCTTTTCAT 117727 || |||| | ||||||| || | || |||| Sbjct 1455 AAGGCCAATACAGACTTTATAAAGTGTTTCTCAT 1422 >seq35896 Length=749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 206/301 (68%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 |||| |||| |||||||||| | |||| ||| | |||||| || ||||| | | Sbjct 524 TCCGCCACAAACTCAATGTATTGACACATGAGCTCGGCGTTCATTCCAATGAGGCCAACT 465 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG-GCGTG 117224 || || | || | | ||| | |||||||| || || ||||| || | ||| | ||| Sbjct 464 GGAAGAGACTCTGATACGAATTCCTTCTCAATTTCCACAGCCTCCTTGATGATTTGGGTG 405 Query 117225 GATAGTTTCGGTAGTGGGTCTATT-ACG--CAAAGTCTTGAAGAGCTCCACGGCAAACTC 117281 | | || | | | |||| || ||| || | | | ||| || |||||| || Sbjct 404 GGAATATTAG-TGGATGGTCGGTTGACGAGCATGCTGTATAGGAGG--CA-GGCAAAGTC 349 Query 117282 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAG 117341 || || |||||||||| | || | |||||| |||||| ||||||||||| || Sbjct 348 GCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGGCCTGGCATTAG 289 Query 117342 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 |||| |||||| | |||| | || | ||||| || |||||||||||||||||||| Sbjct 288 GCCCCTCTTCTTAAGCCAAAAGATGGAACAGAAGCTACCCGAGAAGAAGATACCCTCCAC 229 Query 117402 A 117402 | Sbjct 228 A 228 >seq24166 Length=499 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/232 (68%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 117332 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGA 117391 |||||||||| |||| |||||| | |||| | || | ||||| ||| |||||||||| Sbjct 499 CTGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTCCCCGAGAAGAAGA 440 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA------GGAGCGAGACTTTG 117445 ||||||||||| || || || | | | ||| | ||| | || || |||| Sbjct 439 TACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGGAATGTATCTGCGCCAGCCTTT- 381 Query 117446 TGTCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGG 117505 |||| |||||| | ||||||| || ||||||| | | | || || |||| ||||| Sbjct 380 --TCAATCCATTTGAGGGCCCATTCAGCTTTCTTCTTGACAGAAGGCACCGTTTCGATGG 323 Query 117506 CTTCAAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAA 117557 | | || | | | ||| || | | ||||| | ||| |||| ||||| Sbjct 322 CATTGAAGAGGCGATCCTTCTCTGCTGGGTCCTTCACGTAAGTGTCTATCAA 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589556058072560