Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5862 168 8e-37 seq35896 102 9e-17 >seq5862 Length=2677 Score = 168 bits (186), Expect = 8e-37 Identities = 375/558 (67%), Gaps = 11/558 (2%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| || ||||| || ||||| ||||| || ||||||||||| || | Sbjct 1881 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 1822 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAA 19079 || ||||| || || || || || | ||| || || ||| || | | | || || ||||| Sbjct 1821 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGAA 1763 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA---GCATCATTATT 19136 ||||| || || || || || || |||| ||| || | | || || || || Sbjct 1762 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 1703 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 | ||||||| | || ||||| ||||| ||||| || || | |||| || || || | Sbjct 1702 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 1643 Query 19197 ATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 ||| || | ||| | | ||| | | || || || || | |||||||| | Sbjct 1642 ATTGAAGAGGCGATCCTT---CTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGA 1586 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||||| || ||||| || || || || |||||||| ||||| || || | || || Sbjct 1585 ATACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTC 1526 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 | ||||| || || | || | | |||| || ||| | || || |||||| Sbjct 1525 AGGAATCTGAACCTCGGTCATGAAGCGACCAGCCAAGTTCTCAGTCACAATGCCATCAGA 1466 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT 19433 || ||||| || || |||||| || ||||| ||||| ||||||| ||| | | || Sbjct 1465 CGCAGCAAAGAAGGCCAATACAGACTTTATAAAGTGTTTCTCATCTGCGGTGAGAGAGTT 1406 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||||| ||| ||| || | ||||| || || |||||||||| || ||||| || Sbjct 1405 CCAATGATTGTGATCAGAAGCAAGGTCTACCTCCTCGGCTGTCCAAAAGGAGGCCTCAGC 1346 Query 19494 TTTTTTATACATGTTCCA 19511 ||||| ||||| | ||| Sbjct 1345 CTTTTTGTACATCTCCCA 1328 >seq35896 Length=749 Score = 102 bits (112), Expect = 9e-17 Identities = 236/351 (67%), Gaps = 11/351 (3%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| || ||||| || ||||| ||||| || ||||||||||| || | Sbjct 359 CAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAATTCATTGCTGAAGCAGAGG 300 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAA 19079 || ||||| || || || || || | ||| || || ||| || | | | || || ||||| Sbjct 299 CCTGGCATTAGGCCCCTCTTCTTAAGCCAAAAGATGGAA-CAGAAGCTACCCGAGAAGAA 241 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA---GCATCATTATT 19136 ||||| || || || || || || |||| ||| || | | || || || || Sbjct 240 GATACCCTCCACAGCGGCGAATGCCACTAATCTCTCAGGAAATGTATCTGCGCCAGCCTT 181 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 | ||||||| | || ||||| ||||| ||||| || || | |||| || || || | Sbjct 180 TTCAATCCATCTGAGGGCCCATTCAGCTTTCTTCTTGACCGAAGGCACCGTTTCGATGGC 121 Query 19197 ATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 ||| || | ||| | | ||| | | || || || || | |||||||| | Sbjct 120 ATTGAAGAGGCGATCCTT---CTCTGCAGGGTCCTTCACGTAAGTGTCTATCAAGAGCGA 64 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACA 19304 |||||||| || ||||| || || || || |||||||| ||||| || || Sbjct 63 ATACATTTCCGAGTGAATGTTCTCAATGGCGATCTGAAAGCCGTAGAAGCA 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561704123822160