Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq48723 95.1 1e-14 seq21227 95.1 1e-14 seq9092 86.0 5e-12 seq17103 84.2 2e-11 >seq48723 Length=522 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||| || || || || ||||||||| ||| |||| | || Sbjct 510 ATGCAGATCTTTGTAAAAACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTCT 451 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | ||||||| || || || || ||||| | ||| |||||| Sbjct 450 GACTCTATTGAAAACGTCAAGCAGAAGATTCAAGATAAGGAGGGCATTCCCCCTGATCAA 391 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | |||||||| || ||||| || | |||||| ||| | || || || ||| Sbjct 390 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTTGCAGACTACAAC 331 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||| ||||| ||||| || |||| | ||| | || ||||| Sbjct 330 ATCCAAAAGGAATCCACTCTTCATTTGGTGCTCAGACTGCGTGGAGG 284 >seq21227 Length=1716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || || || || || ||||||||| ||| |||| | || Sbjct 1091 AATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTC 1150 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | |||||||||| ||| ||||| ||||| | ||| |||||| Sbjct 1151 TGACTCGATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCA 1210 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | ||||| || || || || || | || ||| || |||| || || || Sbjct 1211 ACAGCGCCTTATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAA 1270 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| ||||| ||||||||||| || |||| Sbjct 1271 CATCCAAAAGGAATCTACTCTCCATTTGGT 1300 >seq9092 Length=1269 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || | || || || || |||||| |||| |||| | ||| Sbjct 45 ATGCAGATTTTCGTGAAGACGCTCACTGGCAAGACGATTACCCTCGAAGTGGAATCCTCA 104 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||||||||| || ||||| ||||| | || || || Sbjct 105 GACTCGATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 164 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | |||||||| |||||||| | || ||| || ||||||| || ||| Sbjct 165 CAGCGCTTGATCTTTGCAGGCAAACAGCTCGAGGATGGCCGCACGTTGGCCGACTACAAC 224 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || || ||||||||||| || |||| | ||||| || || || Sbjct 225 ATCCAGAAGGAATCTACTCTCCATCTGGTGCTTAGATTGCGTGGTGG 271 >seq17103 Length=3258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||| || || || || ||||||||| ||| ||| || Sbjct 2330 ATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACCATTACCTTGGAAGTGGAGAGCTCG 2389 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||||| || || ||||| ||||| | ||| ||||| Sbjct 2390 GACTCGATTGAGAATGTGAAGCAGAAGATTCAAGACAAGGAGGGTATCCCCCCTGATCAG 2449 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || | ||||||||||| || ||||| | || ||| | | |||| || || || | Sbjct 2450 CAACGTCTTATCTTTGCCGGTAAACAGCTTGAGGATGGCCGCACACTA--GCAGACTACA 2507 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||| ||||| || ||||||||||| | ||||| Sbjct 2508 ACATCCAAAAGGAGTCTACTCTGCATCTTGTATT 2541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425106196938126