Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq663 161 5e-35 seq310 150 9e-32 >seq663 Length=3190 Score = 161 bits (178), Expect = 5e-35 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT 25980 ||| ||| |||||||||||| ||| || | ||||| ||||| || | |||||| |||| Sbjct 1970 CTCCACTCTCTCCATAAATAGATCGGGTACCCACAGAGCATAGAAGAGATCTCTGGCTCG 1911 Query 25981 CATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 | ||||| || ||||| |||||||| || || | ||| ||||| || || | |||||| Sbjct 1910 CTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCA 1851 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 || || | |||||| ||||| || ||||| || || ||||||||||||||||| | Sbjct 1850 AGGCTCCAGATAGATTGCAAATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCG 1791 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGC 26159 ||| || || ||| | ||| ||||||||||| || || | || |||||| |||| Sbjct 1790 TGCTGTGTCGTTGTACACTCGCAACATTGGAATTAGACCGTTGGATGTTCCGTTCGTGC 1732 >seq310 Length=11085 Score = 150 bits (166), Expect = 9e-32 Identities = 179/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT 25980 ||| ||| ||||||| || | ||| || | ||||| ||||| || | |||||| |||| Sbjct 1402 CTCCACTCTCTCCATGAACAGATCGGGTACCCACAGAGCATAGAAGAGATCTCTGGCTCG 1461 Query 25981 CATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 | ||||| || ||||| |||||||| || || || || ||||| || || | |||||| Sbjct 1462 CTGCTCTTCCTTGCCGTGGTTCTTTTTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCA 1521 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 || || | |||||| ||||| || ||||| || || ||||||||||||||||| | Sbjct 1522 AGGCTCCAGATAGATTGCAAATGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCG 1581 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCGTTTGTGC 26159 ||| || || ||| | ||| ||||||||||| || || |||| | | ||||| |||| Sbjct 1582 TGCTGTGTCGTTGTACACTCGCAACATTGGAATTAGACC-GTTGGACGTGCCGTTCGTGC 1640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252862384423550