Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq663 132 6e-26 seq24165 127 2e-24 seq310 120 4e-22 seq5862 98.7 1e-15 seq35896 95.1 1e-14 seq24166 84.2 3e-11 >seq663 Length=3190 Score = 132 bits (146), Expect = 6e-26 Identities = 492/762 (65%), Gaps = 17/762 (2%) Strand=Plus/Plus Query 75267 CTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCC 75326 |||| ||||||||||| | ||| |||||| |||||| ||| || || || || | Sbjct 1495 CTGTGTTGGAGACATATAATCTGATCTCCCAACAACTGTTCACTCATGCCACTCCCACAC 1554 Query 75327 TCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG- 75385 | ||||||||||| || |||||||| ||| | || ||||| || || |||| | Sbjct 1555 TTTTCAATGCTGGCACGCCAAGACCACAGCTTTCTTCGTGCTTTCT---CGTTAACATGC 1611 Query 75386 --GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 || ||| || | || || |||| || |||| ||||||| || || ||| Sbjct 1612 AAGAAGACAGCATAGAAGGGATATATGACACACTTAAACAGTGTGCTTTGATTTCCAAGA 1671 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGG 75502 | || || || || || | | || | | | || ||| |||||| || | Sbjct 1672 GTGCCGGAGGAATAGGTCTCAGTGTGCACAAAATTCGTGCTGCTAA--CTCGTACATCAG 1729 Query 75503 GGG-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 ||| || || || ||| | ||| | ||||||||| | || || | |||| |||||| Sbjct 1730 GGGCACGAACGGAACATCCAACGGTCTAATTCCAATGTTGCGAGTGTACAACGACACAGC 1789 Query 75562 GCGCTATGTAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAAC 75617 ||||| ||| |||||| | || | | | ||||| | | || |||| |||| | Sbjct 1790 ACGCTACGTAGATCAAG-GTGGTGGCAAGAGAAAGGGAGCATTTGCAATCTATCTGGAGC 1848 Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGG 75677 | ||||| || || ||| | |||||||| ||| | | ||||| || | |||||| Sbjct 1849 CTTGGCACGCGGACATCTTTGAGTTCCTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGC 1908 Query 75678 CTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTG 75737 || ||||||||||| | | |||||| | || || || || ||| || | || | Sbjct 1909 AGCGAGCCAGAGATCTCTTCTATGCTCTGTGGGTACCCGATCTATTTATGGAGAGAGTGG 1968 Query 75738 AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGG 75797 ||| || || | ||||| || || || || | ||||||||||||| ||| | Sbjct 1969 AGGCCGGAGGAGACTGGTCACTGTTTTGCCCCAATGAGGCACCAGGTCTTCAAGACAAGT 2028 Query 75798 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG- 75856 ||| | || ||||| | || |||||| ||||| ||||| | | ||| ||| Sbjct 2029 GGGGAGCTGAATTTGAGGAGCTGTACACACGCTATGAGCGCGAGGGCCG-GGCAAGGCGT 2087 Query 75857 ACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 |||| ||| || ||||| ||||| | | | || | |||||||| || Sbjct 2088 GCTGTCAAGGCCCAAGAGCTTTGGTTTGCTATCTTGGAGGCTCAAATAGAGACTGGTACT 2147 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || |||||||| ||||| || || ||| ||| ||||| || | | || || Sbjct 2148 CCTTATATGCTCTACAAAGACCACTGCAACGCGAAATCCAACCATCAGCACCTCGGCACC 2207 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 || | | || || ||||| || |||||| | ||| |||| Sbjct 2208 ATTCAATGTTCCAACCTTTGTACCGAAATTGTCCAGTTCACA 2249 Score = 84.2 bits (92), Expect = 3e-11 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 76376 ACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAA 76435 ||||||| || |||||| || | |||| | |||||||||||||||| |||| || | Sbjct 2607 ACATTTGCCGGCTCTCCCTCGAGCAAAGGTCTTCTTCAGTTTGATATGT-GGAATGTTGA 2665 Query 76436 ACCAAGCT-CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 76494 ||| || | | || |||| ||||||| | |||| |||| | || || || Sbjct 2666 GCCATCCTCCCGTTGGGATTGGGCGTCCCTCAAGGCAAGCATTGTGGAGCACGGCCTGCG 2725 Query 76495 TAACAGTCTT--TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 76552 || || ||| ||| | ||||| ||||| || || || || | || || |||| || Sbjct 2726 AAATAG-CTTACTTG-TCGCACCTATGCCGACGGCTTCTACTTCCCAGATACTGGGAAAC 2783 Query 76553 AATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 ||||| |||||||| || ||||| | ||||||||| Sbjct 2784 AATGAGTGCTTTGAGCCCTACACTTCCAACATCTAC 2819 >seq24165 Length=2677 Score = 127 bits (140), Expect = 2e-24 Identities = 310/462 (67%), Gaps = 17/462 (4%) Strand=Plus/Plus Query 64945 TTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAA 65004 ||||| |||| ||| | ||||| | | || ||| | | | || | |||||| || Sbjct 2026 TTGATAGACACTTACGTGAAGGACCCAGCAGAGAAGGATCGCCTCTTCAATGCCATCGAA 2085 Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCT 65064 || || || | | | ||||||| || ||||||| | |||||| |||| |||| || Sbjct 2086 ACGGTGCCTTCTGTCAAGAAGAAAGCTGAATGGGCCCTCAAATGGATTGA---AAAGGCT 2142 Query 65065 CGCTCC------TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTC 65118 || | ||| | ||| | | | || || || ||||||||||||||||||| Sbjct 2143 GGCGCAGATACATTCCCTGAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTC 2202 Query 65119 TCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGC 65178 || ||| ||||| | || | |||| | |||||| |||| |||||||||||||| ||| Sbjct 2203 TCGGGGAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCAGGCCTCTGC 2262 Query 65179 TTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTC 65238 ||| ||||| | || | |||||||||| || || || |||||| || ||| Sbjct 2263 TTCAGCAATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCC-TG--CCTC 2319 Query 65239 TTCAAGACTTTG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGA 65294 || | | || ||| || |||| | | |||| | |||| | ||| | || || Sbjct 2320 CTCTACAGCATGCTCGTCAACCGACCGTCCA-CGAATATTCCCACCCAAATCATCAAGGA 2378 Query 65295 GGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTAT 65354 ||| || || |||||||| | ||| | | || | || ||| | ||||| || || Sbjct 2379 GGCTGTGGAAATTGAGAAGGAATTCGTATCAGAGTCTCTTCCAGTTGGCCTCATTGGAAT 2438 Query 65355 GAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGA 65396 |||| | ||| |||| | | |||||||||| |||| |||| Sbjct 2439 GAACGCCGAGCTCATGTGCCAATACATTGAGTTTGTGGCGGA 2480 >seq310 Length=11085 Score = 120 bits (132), Expect = 4e-22 Identities = 488/760 (64%), Gaps = 17/760 (2%) Strand=Plus/Minus Query 75269 GTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTC 75328 || ||||||||||| | ||| |||||| |||||| ||| || || || || || Sbjct 1875 GTGTTGGAGACATATAATCTGATCTCCCAACAACTGTTCACTCATGCCACTCCCACACTT 1816 Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG--- 75385 ||||||||||| || ||||| || ||| | || ||||| || || |||| | Sbjct 1815 TTCAATGCTGGCACGCCAAGGCCACAGCTTTCTTCGTGCTTTCT---CGTTAACATGCAA 1759 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||| || | || || |||| || |||| ||||||| || || ||| | Sbjct 1758 GAAGACAGCATAGAAGGGATATATGACACACTTAAACAGTGTGCTTTGATTTCCAAGAGT 1699 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGG 75504 || || || || || | | || | | | || ||| |||||| || ||| Sbjct 1698 GCCGGAGGAATAGGTCTCAGTGTGCACAAAATTCGTGCTGCTAA--CTCGTACATCAGGG 1641 Query 75505 G-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || | ||| | ||||||||| | || || | |||| |||||| | Sbjct 1640 GCACGAACGGCACGTCCAACGGTCTAATTCCAATGTTGCGAGTGTACAACGACACAGCAC 1581 Query 75564 GCTATGTAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 |||| ||| |||||| | || | | | ||||| | | || |||| |||| || Sbjct 1580 GCTACGTAGATCAAG-GTGGTGGCAAGAGAAAGGGAGCATTTGCAATCTATCTGGAGCCT 1522 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 ||||| || || ||| | ||||| | ||| | | ||||| || | |||||| Sbjct 1521 TGGCACGCGGACATCTTTGAGTTTTTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCAG 1462 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || ||||||||||| | | |||||| | || || || |||||| || | || ||| Sbjct 1461 CGAGCCAGAGATCTCTTCTATGCTCTGTGGGTACCCGATCTGTTCATGGAGAGAGTGGAG 1402 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 | || || | ||||| || || || || | ||||||||||||| ||| | | Sbjct 1401 GCCGGAGGAGACTGGTCACTGTTTTGCCCCAATGAGGCACCAGGTCTTCAAGACAAGTGG 1342 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-AC 75858 || | || ||||| | || |||||| ||||| ||||| | | ||| ||| | Sbjct 1341 GGAGCTGAATTTGAGGAGCTGTACACACGCTATGAGCGCGAGGGCCG-GGCAAGGCGTGC 1283 Query 75859 TGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 ||| ||| || ||||| ||||| | | | || | |||||||| || || Sbjct 1282 TGTCAAGGCCCAAGAGCTTTGGTTTGCTATCTTGGAGGCCCAAATAGAGACTGGTACTCC 1223 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 |||||||| |||||||| || ||| ||| ||||| || | | || || || Sbjct 1222 TTATATGCTCTACAAGGACCACTGCAACGCGAAATCCAACCATCAGCACCTCGGCACCAT 1163 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 | | || || ||||| || |||||| | ||| |||| Sbjct 1162 TCAATGTTCCAACCTTTGTACTGAAATTGTCCAGTTCACA 1123 >seq5862 Length=2677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 409/634 (65%), Gaps = 21/634 (3%) Strand=Plus/Plus Query 64775 ATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTT 64834 |||| || | || ||||||| | |||| |||||||||| ||| ||||| ||||| Sbjct 1422 ATGAGAAACACTTTATAAAGTCTGTATTGGCCTTCTTTGCTGCGTCTGATGGCATTGTGA 1481 Query 64835 TTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATTCT 64894 |||||| | | || | || || ||||| || || |||| |||| Sbjct 1482 CTGAGAACTTGGCTGGTCGCTTCATGACCGAGGTTCAGATTCCTGAGGCTCGCTGCTTCT 1541 Query 64895 ACGCATATCA-AT-GCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGATTGA 64952 ||| | ||| || ||||| ||| | |||| |||| ||||| ||||| || Sbjct 1542 ACGGCTTTCAGATCGCCAT--TGAGAACATTCACTCGGAAATGTATTCGCTCTTGATAGA 1599 Query 64953 CAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACC 65012 || ||| | ||||| | || ||| | | | || | |||||| |||| || || Sbjct 1600 CACTTACGTGAAGGACCCTGCAGAGAAGGATCGCCTCTTCAATGCCATCGAAACGGTGCC 1659 Query 65013 ATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC-- 65070 | | ||||||| || ||||||| | | |||| |||| |||| || || | Sbjct 1660 TTCGGTCAAGAAGAAAGCTGAATGGGCCCTCAGATGGATTGA---AAAGGCTGGCGCAGA 1716 Query 65071 ----TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 || | ||| | | | || || || ||||||||||||||||||||| || Sbjct 1717 TACATTTCCTGAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTCTCGGGTAG 1776 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||||| | || | |||| | |||||| |||| || ||||||||||| |||||| || Sbjct 1777 CTTCTGTTCCATCTTTTGGCTTAAGAAGAGGGGCCTAATGCCAGGCCTCTGCTTCAGCAA 1836 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGAC 65246 |||| | || | |||||||||| || || || |||||| || ||| | | | Sbjct 1837 TGAATTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCC-TG--CCTCCTATACAG 1893 Query 65247 TTTG--CGT-AATAGACCCACTACCGAAACTATCCACGC-CATCGTGAAAGAGGCGGTTG 65302 || ||| || |||| | | | || | |||| | ||| | || ||||| || | Sbjct 1894 CATGCTCGTCAACCGACCATCCA-CTAATATTCCCACCCAAATCATCAAGGAGGCTGTGG 1952 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTG 65362 | |||||||| | ||| | | || | || ||| | ||||| || |||||| | | Sbjct 1953 AAATTGAGAAGGAATTCGTATCAGAGTCTCTTCCAGTTGGCCTCATTGGAATGAACGCCG 2012 Query 65363 AGAAGATGTCCGAGTACATTGAGTATGTGTCGGA 65396 || |||| | |||||||||| |||| |||| Sbjct 2013 AGCTCATGTGTCAATACATTGAGTTTGTGGCGGA 2046 >seq35896 Length=749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 206/301 (68%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 65100 TGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGG 65159 ||||||||||||||||||||| || ||||| | || | |||| | |||||| |||| Sbjct 228 TGTGGAGGGTATCTTCTTCTCGGGTAGCTTCTGTTCCATCTTTTGGCTTAAGAAGAGGGG 287 Query 65160 TCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCA 65219 || ||||||||||| |||||| |||||| | || | |||||||||| || || Sbjct 288 CCTAATGCCAGGCCTCTGCTTCAGCAATGAATTGATCAGCAGAGATGAGGGCCTTCATTG 347 Query 65220 GGAGTTTGCCGTGGAGCTCTTCAAGACTTTG--CGT-AATAGACCCACTACCGAAACTAT 65276 || |||||| || ||| | | | || ||| || |||| | | | || | Sbjct 348 CGACTTTGCC-TG--CCTCCTATACAGCATGCTCGTCAACCGACCATCCA-CTAATATTC 403 Query 65277 CCACGC-CATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCC 65335 |||| | ||| | || ||||| || || |||||||| | ||| | | || | || | Sbjct 404 CCACCCAAATCATCAAGGAGGCTGTGGAAATTGAGAAGGAATTCGTATCAGAGTCTCTTC 463 Query 65336 CATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGG 65395 || | ||||| || |||||| | ||| |||| | |||||||||| |||| ||| Sbjct 464 CAGTTGGCCTCATTGGAATGAACGCCGAGCTCATGTGTCAATACATTGAGTTTGTGGCGG 523 Query 65396 A 65396 | Sbjct 524 A 524 >seq24166 Length=499 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/232 (68%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 64945 TTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAA 65004 ||||| |||| ||| | ||||| | | || ||| | | | || | |||||| || Sbjct 271 TTGATAGACACTTACGTGAAGGACCCAGCAGAGAAGGATCGCCTCTTCAATGCCATCGAA 330 Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCT 65064 || || || | | | ||||||| || ||||||| | |||||| |||| |||| || Sbjct 331 ACGGTGCCTTCTGTCAAGAAGAAAGCTGAATGGGCCCTCAAATGGATTGA---AAAGGCT 387 Query 65065 CGCTCC------TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTC 65118 || | ||| | ||| | | | || || || ||||||||||||||||||| Sbjct 388 GGCGCAGATACATTCCCTGAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTC 447 Query 65119 TCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAG 65170 || ||| ||||| | || | |||| | |||||| |||| |||||||||| Sbjct 448 TCGGGGAGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCAG 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596140114630720