Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq21456 95.1 2e-14 seq16312 91.5 3e-13 seq49354 84.2 4e-11 >seq21456 Length=1382 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||| |||||||||| || | || | ||| || || || ||||| Sbjct 478 ATGCCTCCTCTCAAACGAAGTACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCA 419 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | || || | || || || ||||| || || | || |||||||| Sbjct 418 GCTAGTGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAAGCGTTGCTGATCAGGT 359 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||||||||| || || || | ||| || |||| || || || Sbjct 358 GGAATGCCCTCTTTATCTTGGATCTTCTGCTTCACATTCTCGATGCTATCAGAGGATTCT 299 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || |||||||||||||| || ||||| Sbjct 298 ACTTCCAGAGTAATGGTCTTTCCAGTCAGCGTTTTTACAAAGATCTGCAT 249 >seq16312 Length=2383 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| ||||| ||||| || | || | ||| || || || ||||| Sbjct 2313 ATACCACCTCTCAAACGAAGGACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCA 2254 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | ||| || | ||| || || || || || | | ||||| || || Sbjct 2253 GCTAGTGTGCGACCATCCTCGAGTTGCTTACCAGCGAAGATCAGACGTTGTTGGTCGGGT 2194 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || || | || || | || || || ||| Sbjct 2193 GGAATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGCTGTCAGATGATTCA 2134 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || |||||||||||||| |||||||| Sbjct 2133 ACTTCCAGAGTAATGGTCTTTCCAGTGAGCGTTTTTACAAAGATTTGCAT 2084 >seq49354 Length=412 Score = 84.2 bits (92), Expect = 4e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||| ||||| |||| ||| | |||| ||| || ||| || |||||| Sbjct 184 ATGCCTCCTCTCAAACGAAGCACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCG 243 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | || || | ||||| || ||||| || | | ||||||||||| Sbjct 244 GCCAAGGTACGGCCGTCTTCAAGCTGTTTGCCTGCAAAGATCAGACGTTGTTGATCAGGT 303 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || || || | ||| ||| | || || || || Sbjct 304 GGGATGCCCTCCTTGTCTTGAATCTTTTGCTTGACATTCTCAATCGAGTCTGAGGATTCC 363 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 ||||| || || || || || || || ||||| || || || || |||| Sbjct 364 ACTTCGAGGGTAATCGTCTTGCCAGTGAGCGTCTTCACGAAAATCTGCA 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899006716306080