Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq21456 104 4e-17 seq43176 91.5 3e-13 seq17585 91.5 3e-13 seq37486 86.0 1e-11 >seq21456 Length=1382 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || | ||| || || | ||| | ||| || || || || || Sbjct 478 ATGCCTCCTCTCAAACGAAGTACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCA 419 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| |||| || || || ||||| || || | || || |||||| Sbjct 418 GCTAGTGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAAGCGTTGCTGATCAGGT 359 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| || || | || ||||| || |||| || |||||| Sbjct 358 GGAATGCCCTCTTTATCTTGGATCTTCTGCTTCACATTCTCGATGCTATCAGAGGATTCT 299 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||||||| || ||||| | ||||| | || |||||||| Sbjct 298 ACTTCCAGAGTAATGGTCTTTCCAGTCAGCGTTTTTACAAAGATCTGCAT 249 >seq43176 Length=399 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || || || | ||| | ||| || || || || || Sbjct 157 ATACCACCCCTGAGACGAAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 216 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| || | || || |||||||| || | | ||||||||| || Sbjct 217 GCCAAGGTGCGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGA 276 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || | || || || || |||| || ||||| Sbjct 277 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGCTATCAGAAGATTCG 336 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||||||| || ||||| || || || | ||| |||||||| Sbjct 337 ACTTCCAGAGTAATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 386 >seq17585 Length=2016 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || || || | ||| | ||| || || || || || Sbjct 1376 ATACCACCCCTGAGACGAAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 1435 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| || | || || |||||||| || | | ||||||||| || Sbjct 1436 GCCAAGGTGCGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGA 1495 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || | || || || || |||| || ||||| Sbjct 1496 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGCTATCAGAAGATTCG 1555 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||||||| || ||||| || || || | ||| |||||||| Sbjct 1556 ACTTCCAGAGTAATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 1605 >seq37486 Length=869 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || | ||||| || || || || || ||| Sbjct 98 ATACCACCTCTCAGGCGAAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCT 157 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| || |||||||| || | || || ||||| Sbjct 158 GCAAGGGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAAATCAAGCGTTGCTGATCAGGG 217 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || | || || || || |||| || ||||| Sbjct 218 GGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGCTATCAGAAGATTCG 277 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || || ||||| ||||| || | ||| |||||||| Sbjct 278 ACTTCCAGAGTGATAGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904484369965200