Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq663 98.7 3e-15 seq44387 87.8 5e-12 seq8625 87.8 5e-12 seq7848 87.8 5e-12 >seq663 Length=3190 Score = 98.7 bits (108), Expect = 3e-15 Identities = 308/472 (65%), Gaps = 9/472 (2%) Strand=Plus/Minus Query 155870 CTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTC--CATAAATACA 155927 || || |||||||||||| ||||| | | | | | | ||| ||| |||||||| | Sbjct 2006 CTCATTGGGGCAAAACAGTGACCAG--TCTCCTCCGGCCTCCACTCTCTCCATAAATAGA 1949 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATT 155986 || |||| | ||||||||| || || || || | || ||| || | |||||| || Sbjct 1948 TCGGGTACCCACAGAGCATAGAAGAGATCTCTGGCTCGCTG-CTCTTCCTTGCCGTGGTT 1890 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| ||||| | ||| || || || | || ||||||||||| || ||||| Sbjct 1889 CTTTTTCAGCTCCAGGAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAA 1830 Query 156047 ACTACCATTCCTCTTGC---CACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 || || ||||||| |||| |||||||| || || || || | ||| | || | Sbjct 1829 TGCTCCCTTTCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCG 1770 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 | ||| ||||| | ||| ||||| || || || || || | || | ||| || | Sbjct 1769 CAACATTGGAATTAGACCGTTGGATGTTCCGTTCGTGCCCCTGATGTACGAGTTAGCAGC 1710 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 |||| || || | | || || || || || | | || ||||| ||| || | Sbjct 1709 ACGAATTTTGTGCACACTGAGACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACACTG 1650 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 || | || | | || ||||| || || |||| ||| | ||| ||||||| Sbjct 1649 TTTAAGTGTGTCATATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCACGA 1590 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 | | || |||| ||| || ||||| ||||| ||||| || || |||||| Sbjct 1589 AGAAAGCTGTGGTCTTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGA 1538 >seq44387 Length=1213 Score = 87.8 bits (96), Expect = 5e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || || |||||| || ||| | ||||||||| |||| || || | Sbjct 1163 TTTCTGACAGTGTGATCATATTTAACCATGACATCTTCCATAGCTTTGACCAATCGTCTT 1104 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || |||||||| || | ||||| ||||| ||||| || | ||| ||||||| ||| Sbjct 1103 TGTATATAACCGGTCTCGGCAGTTTTGACAGCAGTATCGATCAAACCTTCACGACCTCCC 1044 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||| ||||| || | ||| | |||| || || | | | || |||| |||||| Sbjct 1043 ATAGCGTGGAAAAAGAACTCCTGCGGTGTAAGACCTCTGAGGTATGAATTCTCTACGAAA 984 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||||| | ||| || || |||| ||| |||||| |||| Sbjct 983 CCACGAGACTCAGGGCCATAGTCGTCCTTTACAAAGTGAGGCA 941 >seq8625 Length=3345 Score = 87.8 bits (96), Expect = 5e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || || |||||| || ||| | ||||||||| |||| || || | Sbjct 1012 TTTCTGACAGTGTGATCATATTTAACCATGACATCTTCCATAGCTTTGACCAATCGTCTT 953 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || |||||||| || | ||||| ||||| ||||| || | ||| ||||||| ||| Sbjct 952 TGTATATAACCGGTCTCGGCAGTTTTGACAGCAGTATCGATCAAACCTTCACGACCTCCC 893 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||| ||||| || | ||| | |||| || || | | | || |||| |||||| Sbjct 892 ATAGCGTGGAAAAAGAACTCCTGCGGTGTAAGACCTCTGAGGTATGAATTCTCTACGAAA 833 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||||| | ||| || || |||| ||| |||||| |||| Sbjct 832 CCACGAGACTCAGGGCCATAGTCGTCCTTAACAAAGTGGGGCA 790 >seq7848 Length=3082 Score = 87.8 bits (96), Expect = 5e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || || |||||| || ||| | ||||||||| |||| || || | Sbjct 317 TTTCTGACAGTGTGATCATATTTAACCATGACATCTTCCATAGCTTTGACCAATCGTCTT 258 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || |||||||| || | ||||| ||||| ||||| || | ||| ||||||| ||| Sbjct 257 TGTATATAACCGGTCTCGGCAGTTTTGACAGCAGTATCGATCAAACCTTCACGACCTCCC 198 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||| ||||| || | ||| | |||| || || | | | || |||| |||||| Sbjct 197 ATAGCGTGGAAAAAGAACTCCTGCGGTGTAAGACCTCTGAGGTATGAATTCTCTACGAAA 138 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||||| | ||| || || |||| ||| |||||| |||| Sbjct 137 CCACGAGACTCAGGGCCATAGTCGTCCTTTACAAAGTGAGGCA 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470731511757178