Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq4310 102 1e-16 seq21456 84.2 3e-11 >seq4310 Length=8047 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || || || ||||| | || || ||| | Sbjct 263 TGCAAATCTTCGTGAAGACTTTGACTGGCAAGACTATTACCCTCGAAGTGGAATCCTCTG 204 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| |||| || ||| | || || ||| || || ||||||||||| ||||||| Sbjct 203 ACTCTATTGAAAACGTCAAACAGAAGATCCAAGACAAGGAGGGCATTCCACCTGATCAAC 144 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||| || || ||||| || | || ||| | ||| || | || || || | Sbjct 143 AGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACGCTAGCTGACTACAACA 84 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || ||||||| ||| | || |||||||||| Sbjct 83 TCCAAAAGGAATCCACCCTCCATTTGGTACTGCGTCTAAGAGGAGG 38 >seq21456 Length=1382 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| | || ||||| || |||||| | || |||||| | Sbjct 250 TGCAGATCTTTGTAAAAACGCTGACTGGAAAGACCATTACTCTGGAAGTAGAATCCTCTG 309 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| || | ||||| || | || || ||| |||||| ||||||||||| ||||| | Sbjct 310 ATAGCATCGAGAATGTGAAGCAGAAGATCCAAGATAAAGAGGGCATTCCACCTGATCAGC 369 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || |||||||| || || | || || | || || | || || || | Sbjct 370 AACGCTTGATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGCACACTAGCTGACTACAACA 429 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | || || ||| | || || |||||||| Sbjct 430 TCCAGAAGGAGTCCACTCTTCACTTGGTACTTCGTTTGAGAGGAGG 475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785600419154480