Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq663 102 2e-16 seq310 102 2e-16 seq35896 91.5 3e-13 seq5862 91.5 3e-13 >seq663 Length=3190 Score = 102 bits (112), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGA 110745 |||||||||| |||| | ||||||||| ||| || || ||||||||||| |||| Sbjct 1759 TTCCAATGTTGCGAGTGTACAACGACACAGCACGCTACGTAGATCAAGGTGGTGGCAAGA 1818 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 |||| || ||||||| |||||||| || |||||||| | || || ||||| ||| | | Sbjct 1819 GAAAGGGAGCATTTGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAGTTCCTGG 1878 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | || || || || || ||||| || |||| | ||| | || ||||| ||| Sbjct 1879 AGCTGAAAAAGAACCACGGCAAGGAAGAGCAGCGAGCCAGAGATCTCTTCTATGCTCTGT 1938 Query 110866 GGATTTCAGATTTATTCATG 110885 || | | ||| |||| ||| Sbjct 1939 GGGTACCCGATCTATTTATG 1958 >seq310 Length=11085 Score = 102 bits (112), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGA 110745 |||||||||| |||| | ||||||||| ||| || || ||||||||||| |||| Sbjct 1613 TTCCAATGTTGCGAGTGTACAACGACACAGCACGCTACGTAGATCAAGGTGGTGGCAAGA 1554 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 |||| || ||||||| |||||||| || |||||||| | || || ||||| || || | Sbjct 1553 GAAAGGGAGCATTTGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAGTTTTTGG 1494 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | || || || || || ||||| || |||| | ||| | || ||||| ||| Sbjct 1493 AGCTGAAAAAGAACCACGGCAAGGAAGAGCAGCGAGCCAGAGATCTCTTCTATGCTCTGT 1434 Query 110866 GGATTTCAGATTTATTCATG 110885 || | | ||| | |||||| Sbjct 1433 GGGTACCCGATCTGTTCATG 1414 >seq35896 Length=749 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 131798 AAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAAT---TTTTCT 131854 || |||||||| |||||||| | | ||||||| || | | | ||| || ||| || Sbjct 145 AAGAAGAAAGCTGAATGGGCCCTCAGATGGATTGAAAAGGCTGGCGCAGATACATTTCCT 204 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 ||| | || || || || ||| || ||||| ||||| || ||| |||||| | Sbjct 205 GAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTCTCGGGTAGCTTCTGTTCC 264 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 |||||||||||||||||| | || | ||||| || |||| || |||| |||| ||| Sbjct 265 ATCTTTTGGCTTAAGAAGAGGGGCCTAATGCCAGGCCTCTGCTTCAGCAATGAATTGATC 324 Query 131975 TCGAGAGATGA 131985 |||||||| Sbjct 325 AGCAGAGATGA 335 >seq5862 Length=2677 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 131798 AAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAAT---TTTTCT 131854 || |||||||| |||||||| | | ||||||| || | | | ||| || ||| || Sbjct 1667 AAGAAGAAAGCTGAATGGGCCCTCAGATGGATTGAAAAGGCTGGCGCAGATACATTTCCT 1726 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 ||| | || || || || ||| || ||||| ||||| || ||| |||||| | Sbjct 1727 GAGAGATTAGTGGCATTCGCCGCTGTGGAGGGTATCTTCTTCTCGGGTAGCTTCTGTTCC 1786 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 |||||||||||||||||| | || | ||||| || |||| || |||| |||| ||| Sbjct 1787 ATCTTTTGGCTTAAGAAGAGGGGCCTAATGCCAGGCCTCTGCTTCAGCAATGAATTGATC 1846 Query 131975 TCGAGAGATGA 131985 |||||||| Sbjct 1847 AGCAGAGATGA 1857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185937023389834