Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq32713 82.4 2e-12 seq12250 82.4 2e-12 seq7155 82.4 2e-12 seq6077 82.4 2e-12 seq1559 82.4 2e-12 seq47592 80.6 8e-12 seq43471 80.6 8e-12 seq33258 80.6 8e-12 seq29707 80.6 8e-12 seq27972 80.6 8e-12 seq26896 80.6 8e-12 seq21292 80.6 8e-12 seq20012 80.6 8e-12 seq18240 80.6 8e-12 seq17903 80.6 8e-12 seq16310 80.6 8e-12 seq16199 80.6 8e-12 seq15363 80.6 8e-12 seq15218 80.6 8e-12 seq10292 80.6 8e-12 seq8803 80.6 8e-12 seq7623 80.6 8e-12 seq6598 80.6 8e-12 seq6430 80.6 8e-12 seq4912 80.6 8e-12 seq4545 80.6 8e-12 seq4485 80.6 8e-12 seq3268 80.6 8e-12 seq2920 80.6 8e-12 seq2468 80.6 8e-12 seq2335 80.6 8e-12 seq2109 80.6 8e-12 seq1304 80.6 8e-12 seq1190 80.6 8e-12 seq982 80.6 8e-12 seq889 80.6 8e-12 >seq32713 Length=608 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 448 GTAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCACTGGTTCAAACCCGG 505 >seq12250 Length=1601 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1179 GTAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCACTGGTTCAAACCCGG 1236 >seq7155 Length=10967 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 10392 GTAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCACTGGTTCAAACCCGG 10449 >seq6077 Length=6495 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 4120 GTAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCACTGGTTCAAACCCGG 4063 >seq1559 Length=3485 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2775 GTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 3068 GTAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCACTGGTTCAAACCCGG 3125 >seq47592 Length=372 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 330 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 274 >seq43471 Length=776 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 553 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 609 >seq33258 Length=453 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 321 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 377 >seq29707 Length=2331 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1102 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 1046 >seq27972 Length=1062 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 328 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 384 >seq26896 Length=1122 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 85 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 29 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 529 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 585 >seq21292 Length=1468 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 941 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 885 >seq20012 Length=1877 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1329 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 1273 >seq18240 Length=1430 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1085 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 1029 >seq17903 Length=2561 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 119 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 63 >seq16310 Length=1219 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 535 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 479 >seq16199 Length=4126 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 2274 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 2330 >seq15363 Length=1007 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 310 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 254 >seq15218 Length=1553 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1022 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 966 >seq10292 Length=1966 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 642 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 698 >seq8803 Length=1351 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1107 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 1163 >seq7623 Length=1430 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1108 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 1164 >seq6598 Length=2759 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1987 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 1931 >seq6430 Length=4462 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 3082 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 3026 >seq4912 Length=4789 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 3496 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 3440 >seq4545 Length=6000 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 5528 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 5472 >seq4485 Length=4509 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 468 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 524 >seq3268 Length=7948 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 5539 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 5483 >seq2920 Length=10085 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 431 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 487 >seq2468 Length=2722 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 244 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 188 >seq2335 Length=4396 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 3789 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 3733 >seq2109 Length=5568 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 4549 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 4605 >seq1304 Length=11060 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 2271 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 2215 >seq1190 Length=5158 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1322 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 1378 >seq982 Length=5395 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1134 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 1190 >seq889 Length=8242 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| ||||| Sbjct 1721 TAGCTCAGCTGGTAGAGCGTTAGACTGAAGATCTAAAGGTCGCTGGTTCAAACCCGG 1777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15839615792130