Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq48723 96.9 3e-15 seq50001 93.3 4e-14 seq663 93.3 4e-14 seq43562 87.8 2e-12 seq37486 87.8 2e-12 seq16312 86.0 6e-12 seq49259 82.4 7e-11 >seq48723 Length=522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||| || || ||||| | || || |||| || ||| || Sbjct 510 ATGCAGATCTTTGTAAAAACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTCT 451 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||| || | || || || || ||| ||||| ||||| || || || ||||| Sbjct 450 GACTCTATTGAAAACGTCAAGCAGAAGATTCAAGATAAGGAGGGCATTCCCCCTGATCAA 391 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || || | || ||||| || || ||||||| | | | | || ||||| Sbjct 390 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTTGCAGACTACAAC 331 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAA 25405 || ||||| |||||||| ||||||| ||| | ||| || | |||||| || Sbjct 330 ATCCAAAAGGAATCCACTCTTCATTTGGTGCTCAGACTGCGTGGAGGACAA 280 >seq50001 Length=390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || ||||| ||||| || | ||||| ||||||| || | || Sbjct 88 CATGCAGATCTTTGTGAAGACATTGACCGGCAAGACCATCACCCTCGAAGTGGA-GTCAT 146 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||| | || ||| | ||||| || || ||| || || ||||| || || ||||||| Sbjct 147 CTGATTCGATTGAGAATGTAAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATC 206 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| | | || | | |||||| || ||||| |||| | | | | || |||| Sbjct 207 AGCAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACTCTGGCTGACTACA 266 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCAT 25412 | ||||| || ||||| ||| |||| || ||| | | | || ||| ||| || |||| Sbjct 267 ACATTCAGAAGGAATCTACCCTTCACTTGGTGCTTCGTCTCAGGGGATAAAACTGCTCAT 326 >seq663 Length=3190 Score = 93.3 bits (102), Expect = 4e-14 Identities = 292/444 (66%), Gaps = 9/444 (2%) Strand=Plus/Minus Query 137973 AAAAATATCAGCATGCCAAGGCTCGATATAGACGGCCATAGCTCCTTTTCTTTT---ACC 138029 ||| || || || ||||||||||| | ||||| || | ||||| ||||| || ||| Sbjct 1868 AAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCAAATGCTCCCTTTCTCTTGCCACC 1809 Query 138030 GCCTTGATCCACATGACGCAACATACTATTAAAGACACGCAATGCAGGACCTAAGCCCGC 138089 |||||||| || | || | || | || ||||| ||| || || Sbjct 1808 ACCTTGATCTACGTAGCGTGCTGTGTCGTTGTACACTCGCAACATTGGAATTAGACCGTT 1749 Query 138090 CGCTGTTCCGTTCGTAGATTTAATTGTACTA-TTGGCAGCACGAATTTGAGTTACGTTGA 138148 | |||||||||||| | || |||| | || ||||||||||||| || ||| Sbjct 1748 GGATGTTCCGTTCGTGCCCCTGAT-GTACGAGTTAGCAGCACGAATTTTGTGCACACTGA 1690 Query 138149 GGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTATAGATGC 138208 | || || || || | || || |||| ||||| | || || || ||| || | Sbjct 1689 GACCTATTCCTCCGGCACTCTTGGAAATCAAAGCACACTGTTTAAGTGTGTCATATATCC 1630 Query 138209 CGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGCATTTTCA 138268 | | |||||||||||| || ||||| | ||| | ||||| || | || || || | Sbjct 1629 CTTCTATGCTGTCTTCTTGCATGTTAACGAGAAAGCACGAAGAAAGCTGTGGTCTTGGCG 1570 Query 138269 TGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACA-TTTTCGAGCGCATCAATCTA 138327 ||||||| ||| || |||||| | || || || |||| || | | | | |||| || Sbjct 1569 TGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAACAGTTGTTGGGAG-ATCAGATTA 1511 Query 138328 TATGACTCGATCGCA-CTCTCGATATCATCACCATGAATCTGAAGAGCGACACGCATCAG 138386 |||| ||| | | || |||| ||| ||| ||| | | ||| || ||||||| Sbjct 1510 TATGTCTCCAACACAGCTCT-GATGTCAGTTTTATGCAGTCCCACAGCAACTCGCATCAA 1452 Query 138387 CATGTGTTGAGGTCTCTCGACGAT 138410 ||||||||| ||||| || || || Sbjct 1451 CATGTGTTGGGGTCTTTCCACAAT 1428 >seq43562 Length=381 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||||||||| || || ||||| | || || | || ||||| || Sbjct 352 CATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACCATTACCCTTGAGGTCGAGTCCTC 293 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||| |||||| | ||||| || || || || || ||||| || || |||||||| Sbjct 292 TGATAGCATCGAGAATGTAAAGCAGAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCA 233 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | || ||||| || ||||| || | | | | ||| ||||| Sbjct 232 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAA 173 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||||||| | || || ||| | | || |||||||| Sbjct 172 CATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTTTAAGAGGAGG 125 >seq37486 Length=869 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 |||| ||||| | || || || ||||| || ||||| | ||||| |||| || ||| Sbjct 561 AACACAATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACCCTCGAGGTGGAA 502 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || || |||||||| | || || || || || || || ||||| || || || Sbjct 501 TCCTCGGACTCTATCGAGAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATGCCCCCT 442 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 |||||||| | ||||| | | ||||| || || || |||| | | | | || Sbjct 441 GATCAGCAGCGCCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGTCGCACCCTTGCAGAC 382 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || || || ||||||||| | || || ||| | | ||||||||||| Sbjct 381 TACAACATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTTTGAGAGGAGG 329 >seq16312 Length=2383 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 25170 ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAG 25229 ||||||||||| | || || || || || || ||||| | ||||| |||| || ||| Sbjct 1851 ACAACATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTGGAAT 1910 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || || |||| || | || || || || ||| || || ||||| || || || | Sbjct 1911 CCTCTGACTCTATTGAAAACGTGAAGCAGAAGATTCAAGACAAGGAGGGCATCCCACCTG 1970 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 ||||||| | ||||| | | |||||||| || || |||| | | || || | Sbjct 1971 ATCAGCAGCGTCTCATCTTTGCAGGCAAACAGCTGGAGGATGGCCGCACCCTCGCTGACT 2030 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| |||||||| ||||| ||| | || || || | | |||| ||||| Sbjct 2031 ACAACATTCAAAAGGAATCTACCCTCCACTTGGTCCTTCGTCTGAGGGGAGG 2082 >seq49259 Length=868 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||| || || ||||| | || || |||| || ||| || Sbjct 471 ATGCAGATCTTTGTAAAAACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTCT 412 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||| || | || || || || ||| ||||| ||||| || || || || ||| Sbjct 411 GACTCTATTGAAAACGTCAAGCAGAAGATTCAAGATAAGGAGGGCATTCCCCCTGACCAG 352 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || || | || || || ||||| || |||| | | | ||||||||| Sbjct 351 CAGCGTCTGATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCACCTTGGCCGATTACAAC 292 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||| || || ||| | ||||||||| Sbjct 291 ATCCAAAAGGAGTCTACCCTCCATTTAGTG 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444773965414080