Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20comandoni_20[genbank_20GCA_5F002025285.1_202017-03- 13] 57,594 sequences; 86,214,659 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq48723 96.9 3e-15 seq37207 93.3 3e-14 seq17103 93.3 3e-14 seq49259 89.7 4e-13 seq49354 87.8 1e-12 seq21456 87.8 1e-12 seq21227 86.0 5e-12 seq4310 86.0 5e-12 seq20128 82.4 6e-11 >seq48723 Length=522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| |||||||| |||||||||||| | || ||| || Sbjct 510 ATGCAGATCTTTGTAAAAACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTCT 451 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || ||| ||| | || || || || ||| || || || ||| | ||| ||||||| Sbjct 450 GACTCTATTGAAAACGTCAAGCAGAAGATTCAAGATAAGGAGGGCATTCCCCCTGATCAA 391 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | ||||| | || ||||| || | |||||| ||| | | || |||||| Sbjct 390 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTTGCAGACTACAAC 331 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATAA 106490 || ||||| ||||| || || ||||| || | || | || |||||| || Sbjct 330 ATCCAAAAGGAATCCACTCTTCATTTGGTGCTCAGACTGCGTGGAGGACAA 280 >seq37207 Length=701 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || || ||||||||||||||||| ||| ||||| || | Sbjct 563 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAAGTTGAGAGCTCT 504 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || ||| ||| | ||||| ||||| || ||||| || ||| | || ||| ||| Sbjct 503 GACTCTATTGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAA 444 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||| | ||| ||||| || | || ||| || ||| || |||||| Sbjct 443 CAACGTCTTATCTTTGCAGGCAAGCAGCTCGAGGATGGCCGCACGCTGGCTGACTACAAC 384 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATAATGA 106493 || ||||| || || || || || || || | || || || ||||| ||||| Sbjct 383 ATCCAAAAGGAGTCCACTCTTCACTTGGTGCTCAGATTGCGTGGAGGGCAATGA 330 >seq17103 Length=3258 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAA--ACAGAACCCG 106317 ||||| || ||||| ||||| ||||| || |||||||||||| ||||| ||| | || Sbjct 2330 ATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACCATTACCTTGGAAGTGGAGAGCTCG 2389 Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 || || ||| | ||||| || || ||| ||||| || || | ||| ||||| Sbjct 2390 --GACTCGATTGAGAATGTGAAGCAGAAGATTCAAGACAAGGAGGGTATCCCCCCTGATC 2447 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTA 106435 | ||| | ||||| | ||| || ||||| | || ||| | | |||| | || || Sbjct 2448 AGCAACGTCTTATCTTTGCCGGTAAACAGCTTGAGGATGGCCGCACACTA--GCAGACTA 2505 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 |||||| ||||| || ||||| || ||| | |||||| Sbjct 2506 CAACATCCAAAAGGAGTCTACTCTGCATCTTGTATTG 2542 >seq49259 Length=868 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| |||||||| |||||||||||| | || ||| || Sbjct 471 ATGCAGATCTTTGTAAAAACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTCT 412 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || ||| ||| | || || || || ||| || || || ||| | ||| ||| || Sbjct 411 GACTCTATTGAAAACGTCAAGCAGAAGATTCAAGATAAGGAGGGCATTCCCCCTGACCAG 352 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | || || || ||| | || ||| || ||| |||||||||| Sbjct 351 CAGCGTCTGATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCACCTTGGCCGATTACAAC 292 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| || ||||| || |||||||| Sbjct 291 ATCCAAAAGGAGTCTACCCTCCATTTAGT 263 >seq49354 Length=412 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 106261 TGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGCG 106320 |||| ||||| || || || | ||||||||||| |||||| | ||| ||| || | Sbjct 412 TGCAGATTTTCGTGAAGACGCTCACTGGCAAGACGATTACCCTCGAAGTGGAATCCTCAG 353 Query 106321 ATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAAC 106380 | || ||| | || || ||||| ||| ||||| || ||| | || |||||||| Sbjct 352 ACTCGATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCTGATCAAC 293 Query 106381 AAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAACA 106440 || | || || | ||| |||||||| | ||||| || ||| ||| ||||||| Sbjct 292 AACGTCTGATCTTTGCAGGCAAACAGCTTGAAGACGGCCGTACCTTGGCCGACTACAACA 233 Query 106441 TACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 | || || || ||||| || ||||| || | | || ||||||| Sbjct 232 TTCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTTTGAGAGGAGG 187 >seq21456 Length=1382 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || |||||||||||||||||||| || ||||| ||| || Sbjct 477 ATGCAGATTTTTGTCAAGACATTGACTGGCAAGACCATCACTTTGGAAGTTGAATCCTCT 536 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || || || || || ||||| || ||| | || |||||| Sbjct 537 GACTCGATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCACCTGATCAG 596 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| || || || | || || || ||| ||||||||| Sbjct 597 CAGCGCCTCATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCTGATTACAAC 656 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||| ||||| || || ||||| || | || || || |||||| Sbjct 657 ATCCAAAAGGAATCCACCCTTCATTTGGTGCTCAGATTGCGTGGAGGA 704 >seq21227 Length=1716 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| || || || || |||||||| |||||||||||| | || ||| || Sbjct 1091 AATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACCATTACCCTCGAGGTGGAATCCTC 1150 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || ||| | || || ||||| || ||||| || ||| | ||| ||||| Sbjct 1151 TGACTCGATTGAGAACGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCA 1210 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | ||||||| || || || || | || ||| || ||| || ||||| Sbjct 1211 ACAGCGCCTTATTTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAA 1270 Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468 ||| ||||| |||||||| || ||||| || Sbjct 1271 CATCCAAAAGGAATCTACTCTCCATTTGGT 1300 >seq4310 Length=8047 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || || || || |||||||||||||| |||||| | ||| ||| || Sbjct 264 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACTATTACCCTCGAAGTGGAATCCTCT 205 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || ||| ||| | || ||||| || || ||||| || ||| | || ||||||| Sbjct 204 GACTCTATTGAAAACGTCAAACAGAAGATCCAAGACAAGGAGGGCATTCCACCTGATCAA 145 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | || || || || | || ||| || | | || |||||| Sbjct 144 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACGCTAGCTGACTACAAC 85 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||| || || ||||| ||| || | || ||||||| Sbjct 84 ATCCAAAAGGAATCCACCCTCCATTTGGTACTGCGTCTAAGAGGAGG 38 >seq20128 Length=1734 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| || || ||||| |||||||| ||||| ||||| |||| ||| || Sbjct 860 AATGCAAATCTTCGTGAAAACTTTGACTGGAAAGACGATTACTCTGGAGGTGGAATCCTC 919 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || ||| ||| | || || ||||| ||| ||||| || ||| | ||| |||||| Sbjct 920 AGACTCTATTGAAAACGTCAAGCAAAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCA 979 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | || || | || || || || | || || || | | ||||||||| Sbjct 980 GCAACGTCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTCGCCGATTACAA 1039 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| || || |||||||| || || || || | | || ||||||| Sbjct 1040 CATCCAGAAGGAATCTACTCTCCACTTGGTGCTCCGCCTAAGAGGAGG 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402047194041152